Evidence map›Paper›PMID 29594967›Full record

ArticleDigestive diseases and sciences2018

Fecal Microbiome Among Nursing Home Residents with Advanced Dementia and Clostridium difficile.

Rafael Araos, Nikolaos Andreatos, Juan Ugalde, Susan Mitchell, Eleftherios Mylonakis, Erika M C D'Agata

Abstract read
In one paragraph

Article in Digestive diseases and sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Screening and Characterization ofAntioxidants (Basel, Switzerland) · 2023
    Article
  4. Gut Microbiota Composition Associated withPathogens (Basel, Switzerland) · 2022
    Review
  5. Preventive Effects ofFrontiers in microbiology · 2021
    Article
  6. DietaryFrontiers in veterinary science · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Exercise, the Gut Microbiome, and Frailty.Annals of geriatric medicine and research · 2019
    Review
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rafael AraosInstituto de Ciencias e Innovación en Medicina (ICIM), Facultad de Medicina Clínica Alemana, Universidad del Desarrollo, Santiago, Chile.
Nikolaos AndreatosInfectious Diseases Division, Rhode Island Hospital, Warren Alpert Medical School of Brown University, 593 Eddy Street, Aldrich 720, Providence, RI, USA.
Juan UgaldeuBiome, Inc, San Francisco, CA, USA.
Susan MitchellHebrew SeniorLife Institute for Aging Research, Boston, MA, USA.
Eleftherios MylonakisInfectious Diseases Division, Rhode Island Hospital, Warren Alpert Medical School of Brown University, 593 Eddy Street, Aldrich 720, Providence, RI, USA.
Erika M C D'AgataInfectious Diseases Division, Rhode Island Hospital, Warren Alpert Medical School of Brown University, 593 Eddy Street, Aldrich 720, Providence, RI, USA. edagata@lifespan.org.

Funding

Determinants, Decision-Making and Outcomes of Antibiotic Use in Advanced DementiaR01AG032982 · NIA · HEBREW REHABILITATION CENTER FOR AGED · PI D'AGATA, ERIKA M, MITCHELL, SUSAN L · 2009 to 2013
$2.9M
Midcareer Mentoring Award for Patient-Oriented Research in AgingK24AG033640 · NIA · HEBREW REHABILITATION CENTER FOR AGED · PI MITCHELL, SUSAN L · 2009 to 2018
$1.8M
Midcareer Investigator Award in Patient-Oriented ResearchK24AI119158 · NIAID · RHODE ISLAND HOSPITAL · PI D'AGATA, ERIKA M · 2016 to 2020
$885k
CDC HHS 200-2016-91939National Institute of Allergy and Infectious Diseases K24 AI119158NIAID NIH HHS K24 AI119158NIA NIH HHS K24 AG033640NIA NIH HHS K24AG033640NIA NIH HHS R01 AG032982
6 · The paper itself

Abstract

BACKGROUND/

objectivesPatients colonized with toxinogenic strains of Clostridium difficile have an increased risk of subsequent infection. Given the potential role of the gut microbiome in increasing the risk of C. difficile colonization, we assessed the diversity and composition of the gut microbiota among long-term care facility (LTCF) residents with advanced dementia colonized with C. difficile.

designRetrospective analysis of rectal samples collected during a prospective observational study.

settingThirty-five nursing homes in Boston, Massachusetts.

participantsEighty-seven LTCF residents with advanced dementia. MEASUREMENTS: Operational taxonomic units were identified using 16S rRNA sequencing. Samples positive for C. difficile were matched to negative controls in a 1:3 ratio and assessed for differences in alpha diversity, beta diversity, and differentially abundant features.

resultsClostridium difficile sequence variants were identified among 7/87 (8.04%) residents. No patient had evidence of C. difficile infection. Demographic characteristics and antimicrobial exposure were similar between the seven cases and 21 controls. The overall biodiversity among cases and controls was reduced with a median Shannon index of 3.2 (interquartile range 2.7-3.9), with no statistically significant differences between groups. The bacterial community structure was significantly different among residents with C. difficile colonization versus those without and included a predominance of Akkermansia spp., Dermabacter spp., Romboutsia spp., Meiothermus spp., Peptoclostridium spp., and Ruminococcaceae UGC 009.

conclusionLTCF residents with advanced dementia have substantial dysbiosis of their gut microbiome. Specific taxa characterized C. difficile colonization status.

Indexed as

Gastrointestinal MicrobiomeHomes for the AgedNursing HomesBostonClostridioides difficileClostridium InfectionsDementiaDNA, BacterialDysbiosisFecesHumansRetrospective StudiesRibotypingDNA, BacterialAdvanced dementiaClostridium difficileColonizationMicrobiome

Identifiers

PMID29594967
PMCPMC6434537

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.