Evidence map›Paper›PMID 29594533›Full record

ArticleMikrochimica acta2017

Determination of RNase H activity via real-time monitoring of target-triggered rolling circle amplification.

Chang Yeol Lee, Kyoung Suk Kang, Ki Soo Park, Hyun Gyu Park

Abstract read
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In one paragraph

Article in Mikrochimica acta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chang Yeol LeeDepartment of Chemical and Biomolecular Engineering (BK 21+ program), KAIST, Daehak-ro 291, Yuseong-gu, Daejeon, 305-338, Republic of Korea.
Kyoung Suk KangDepartment of Chemical and Biomolecular Engineering (BK 21+ program), KAIST, Daehak-ro 291, Yuseong-gu, Daejeon, 305-338, Republic of Korea.
Ki Soo ParkDepartment of Biological Engineering, College of Engineering, Konkuk University, Seoul, 05029, Republic of Korea. kskonkuk@gmail.com.
Hyun Gyu ParkDepartment of Chemical and Biomolecular Engineering (BK 21+ program), KAIST, Daehak-ro 291, Yuseong-gu, Daejeon, 305-338, Republic of Korea. hgpark@kaist.ac.kr.
Korea Advanced Institute of Science and Technology · KRKonkuk University · KR

Funding

Ministry of Science, ICT and Future planning of Korea 2013M3A6B2078964Ministry of Science, ICT and Future planning of Korea 2015R1A2A1A01005393Ministry of Science, ICT and Future planning of Korea 2017R1C1B5017724
6 · The paper itself

Abstract

The authors describe a method for real-time monitoring of the activity of ribonuclease H (RNase H). It is based on target-triggered rolling circle amplification (RCA). It utilizes a specially designed primer that contains a RNA sequence in the center and an amino group at the 3'-end. In the absence of RNase H, the primer when hybridized to a circular DNA template is not extended by DNA polymerase due to the amino group at the 3'-end. In contrast, the presence of RNase H specifically degrades the RNA sequence of the primer hybridized to the circular DNA template. This results in the conversion of the 3'-amino group to a 3'-hydroxy group and thereby enables the extension reaction promoted by DNA polymerase. This, consequently, leads to efficient RCA producing a long concatenated DNA strand. Its generation can be monitored in real-time by using the fluorescent dye SYBR green II which is specific for single-stranded DNA. Based on this RNase H-triggered RCA, RNase H activity can be selectively determined at levels as low as 0.019 U·mL

Indexed as

Base SequenceBiosensing TechniquesDNA, CircularDNA, Single-StrandedFluorescenceNucleic Acid Amplification TechniquesOrganic ChemicalsRibonuclease HDNA, CircularDNA, Single-StrandedOrganic ChemicalsRibonuclease HSYBR Green IIAmino groupDNADNA polymeraseEnzymeFluorescent biosensorsIsothermal nucleic acid amplificationPrimerSYBR green II dye

Identifiers

PMID29594533
OpenAlexW2773061927

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.