Evidence map›Paper›PMID 29594345›Full record

ArticleParasitology research2018

Ubc7/Ube2g2 ortholog in Entamoeba histolytica: connection with the plasma membrane and phagocytosis.

Rinki Kumari, Preeti Gupta, Swati Tiwari

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Article in Parasitology research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. The role of ubiquitin-conjugating enzyme in the process of spermatogenesis.Reproductive biology and endocrinology : RB&E · 2024
    Review
  2. Article
  3. Review
  4. Article
  5. Protein Sumoylation Is Crucial for Phagocytosis inInternational journal of molecular sciences · 2021
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Rinki KumariSchool of Biotechnology, Jawaharlal Nehru University, New Delhi, 110067, India.
Preeti GuptaMicrobiology Division, Defence Research and Development Establishment, Jhansi Road, Gwalior, MP, 474002, India.
Swati TiwariSchool of Biotechnology, Jawaharlal Nehru University, New Delhi, 110067, India. swati_tiwari@mail.jnu.ac.in.ORCID http://orcid.org/0000-0002-8929-2796
Jawaharlal Nehru University · INDefence Research and Development Establishment · IN

Funding

Defence Research and Development Organisation DLS/81/48222/LSRB-176/BTB/2008Department of Biotechnology , Ministry of Science and Technology BT/01/CEIB/11/V/08Science and Engineering Research Board PURSEUniversity Grants Commission 17-06/2012(I)EU-V
6 · The paper itself

Abstract

Endoplasmic reticulum (ER)-associated degradation (ERAD) and unfolded protein response (UPR) pathways are important for quality and quantity control of membrane and secretory proteins. We have identified orthologs of ER-associated ubiquitin conjugating enzymes (E2s) Ubc6/Ube2j2 and Ubc7/Ube2g2, ubiquitin ligases (E3) Hrd1 and GP78/AMFR, and sensor of UPR, Ire1 in E. histolytica that show conservation of important features of these proteins. Biochemical characterization of the ortholog of ERAD E2, Ubc7/Ube2g2 (termed as EhUbc7), was carried out. This E2 was transcriptionally upregulated several folds upon induction of UPR with tunicamycin. Ire1 ortholog was also upregulated upon UPR induction suggesting a linked UPR and ERAD pathway in this organism. EhUbc7 showed enzymatic activity and, similar to its orthologs in higher eukaryotes, formed polyubiquitin chains in vitro and localized to both cytoplasm and membranes. However, unlike its ortholog in higher eukaryotes, it also showed localization to the plasma membrane along with calreticulin. Inactivation of EhUbc7 significantly inhibited erythrophagocytosis, suggesting a novel function that has not been reported before for this E2. No change in growth, motility, or cell-surface expression of Gal/GalNAC lectin was observed due to inactivation of EhUbc7. The protein was present in the phagocytic cups but not in the phagosomes. A significant decrease in the number of phagocytic cups in inactive EhUbc7 expressing cells was observed, suggesting altered kinetics of phagocytosis. These findings have implications for evolutionary and mechanistic understanding of connection between phagocytosis and ER-associated proteins.

Indexed as

AnimalsCalreticulinCell MembraneEndoplasmic ReticulumEndoplasmic Reticulum-Associated DegradationEndoribonucleasesEntamoeba histolyticaHumansPhagocytosisProtein Serine-Threonine KinasesReceptors, Autocrine Motility FactorTunicamycinUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUnfolded Protein ResponseAMFR protein, humanCalreticulinEndoribonucleasesERN1 protein, humanProtein Serine-Threonine KinasesReceptors, Autocrine Motility FactorSYVN1 protein, humanTunicamycinUBE2G2 protein, humanUBE2J2 protein, humanUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesEndoplasmic reticulumEntamoebaN-glycanParasitePhagocytosisProtozoaQuality controlUbiquitinUnfolded protein response

Identifiers

PMID29594345
OpenAlexW2794790840

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.