ArticleFrontiers in microbiology2018
A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of
Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed.
- Machine Learning-Based Prediction of Antimicrobial Resistance inDiagnostics (Basel, Switzerland) · 2026Article
- When to take action in food-borne disease outbreaks?Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025Article
- Antimicrobial Resistance and Genetic Characterization ofAnimals : an open access journal from MDPI · 2025Article
- Genomic epidemiology of aMicrobial genomics · 2025Article
- GWAS Study Applied to Phenotypically Slow Growth Strains ofMicroorganisms · 2025Article
- Average Nucleotide Identity and Digital DNA-DNA Hybridization Analysis Following PromethION Nanopore-Based Whole Genome Sequencing Allows for Accurate Prokaryotic Typing.Diagnostics (Basel, Switzerland) · 2024Article
- Genomic Characterization ofMicroorganisms · 2024Article
- Public health implementation of pathogen genomics: the role for accreditation and application of ISO standards.Microbial genomics · 2023Article
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- The Slaughterhouse as Hotspot of CC1 and CC6Microorganisms · 2023Article
- Identification of the NovelPathogens (Basel, Switzerland) · 2023Article
- Multi-approach methods to predict cryptic carbapenem resistance mechanisms inFrontiers in microbiology · 2023Article
- Article
- First Report of Septicaemic Listeriosis in a Loggerhead Sea Turtle (Animals : an open access journal from MDPI · 2022Article
- Whole-Genome Sequences of Two Klebsiella pneumoniae Strains (Sequence Types 23 and 35) from Wildlife.Microbiology resource announcements · 2022Article
- Phenotypic and Genetic Characterization ofAnimals : an open access journal from MDPI · 2022Article
- Whole Genome Sequencing Contributions and Challenges in Disease Reduction Focused on Malaria.Biology · 2022Review
- In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.BMC genomics · 2022Article
- Atypical Serogroup IVb-v1 ofFrontiers in microbiology · 2022Article
- Whole-Genome Sequencing Characterization of Virulence Profiles ofMicroorganisms · 2021Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Whole genome sequencing (WGS), using high throughput sequencing technology, reveals the complete sequence of the bacterial genome in a few days. WGS is increasingly being used for source tracking, pathogen surveillance and outbreak investigation due to its high discriminatory power. In the food industry, WGS used for source tracking is beneficial to support contamination investigations. Despite its increased use, no standards or guidelines are available today for the use of WGS in outbreak and/or trace-back investigations. Here we present a validation of our complete (end-to-end) WGS workflow for
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