Evidence map›Paper›PMID 29593310›Full record

ArticleScientific reports2018

First insights of peptidoglycan amidation in Gram-positive bacteria - the high-resolution crystal structure of Staphylococcus aureus glutamine amidotransferase GatD.

Francisco Leisico, Diana V Vieira, Teresa A Figueiredo, Micael Silva, Eurico J Cabrita, Rita G Sobral, Ana Madalena Ludovice, José Trincão, Maria João Romão, Hermínia de Lencastre and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Francisco LeisicoUCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.ORCID 0000-0002-4672-4659
Diana V VieiraUCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.ORCID 0000-0001-7388-6904
Teresa A FigueiredoUCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.
Micael SilvaUCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.
Eurico J CabritaUCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.ORCID 0000-0002-0720-2751
Rita G SobralUCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.
Ana Madalena LudoviceUCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.
José TrincãoDiamond Light Source, Didcot, United Kingdom.
Maria João RomãoUCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.
Hermínia de LencastreLaboratory of Molecular Genetics, Microbiology of Human Pathogens Unit, Instituto de Tecnologia Química e Biológica António Xavier da Universidade Nova de Lisboa, Oeiras, Portugal. lencash@mail.rockefeller.edu.
Teresa Santos-SilvaUCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal. tsss@fct.unl.pt.
Universidade Nova de Lisboa · PTDiamond Light Source · GBResearch Complex at Harwell · GBRockefeller University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gram-positive bacteria homeostasis and antibiotic resistance mechanisms are dependent on the intricate architecture of the cell wall, where amidated peptidoglycan plays an important role. The amidation reaction is carried out by the bi-enzymatic complex MurT-GatD, for which biochemical and structural information is very scarce. In this work, we report the first crystal structure of the glutamine amidotransferase member of this complex, GatD from Staphylococcus aureus, at 1.85 Å resolution. A glutamine molecule is found close to the active site funnel, hydrogen-bonded to the conserved R128. In vitro functional studies using

Indexed as

Anthranilate SynthaseAnti-Bacterial AgentsBacterial ProteinsCarbon-Nitrogen LigasesCarbon-Nitrogen Ligases with Glutamine as Amide-N-DonorCatalytic DomainCell WallGlutamic AcidGlutamineGram-Positive BacteriaMultienzyme ComplexesNitrogenous Group TransferasesPeptidoglycanStaphylococcal InfectionsStaphylococcus aureusAnthranilate Synthaseanthranilate synthase, glutamine amidotransferase subunitAnti-Bacterial AgentsBacterial ProteinsCarbon-Nitrogen LigasesCarbon-Nitrogen Ligases with Glutamine as Amide-N-DonorGlutamic AcidGlutamineGMP synthase (glutamine-hydrolyzing)Multienzyme ComplexesNitrogenous Group TransferasesPeptidoglycan

Identifiers

PMID29593310
PMCPMC5871853
OpenAlexW2793365173

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.