Evidence map›Paper›PMID 29593264›Full record

ArticleNature communications2018

Downregulation of cytoplasmic DNases is implicated in cytoplasmic DNA accumulation and SASP in senescent cells.

Akiko Takahashi, Tze Mun Loo, Ryo Okada, Fumitaka Kamachi, Yoshihiro Watanabe, Masahiro Wakita, Sugiko Watanabe, Shimpei Kawamoto, Kenichi Miyata, Glen N Barber and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 226 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
226citing papers in PubMed, 1 pooled it
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

226 citing papers in PubMed, 1 synthesis or guideline pooled it, 344 citations in OpenAlex.

  1. Pooled it
  2. Review
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  12. Article
  13. Integrative Approaches to Treating Cellular Senescence in Kidney Disease.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  14. STING causes replication stress and nascent DNA degradation via SAMHD1.bioRxiv : the preprint server for biology · 2026
    Article
  15. Article
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  17. Review
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  19. Article
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166 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Akiko TakahashiThe Cancer Institute, Japanese Foundation for Cancer Research, Koto-ku, Tokyo, 135-8550, Japan.
Tze Mun LooThe Cancer Institute, Japanese Foundation for Cancer Research, Koto-ku, Tokyo, 135-8550, Japan.
Ryo OkadaThe Cancer Institute, Japanese Foundation for Cancer Research, Koto-ku, Tokyo, 135-8550, Japan.
Fumitaka KamachiFaculty of Science & Technology, Tokyo University of Science, Noda-shi, Chiba, 278-8510, Japan.
Yoshihiro WatanabeFaculty of Science & Technology, Tokyo University of Science, Noda-shi, Chiba, 278-8510, Japan.
Masahiro WakitaResearch Institute for Microbial Diseases, Osaka University, Suita-shi, Osaka, 565-0871, Japan.
Sugiko WatanabeResearch Institute for Microbial Diseases, Osaka University, Suita-shi, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0002-2120-9546
Shimpei KawamotoResearch Institute for Microbial Diseases, Osaka University, Suita-shi, Osaka, 565-0871, Japan.
Kenichi MiyataThe Cancer Institute, Japanese Foundation for Cancer Research, Koto-ku, Tokyo, 135-8550, Japan.
Glen N BarberDepartment of Medicine, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Naoko OhtaniFaculty of Science & Technology, Tokyo University of Science, Noda-shi, Chiba, 278-8510, Japan.
Eiji HaraThe Cancer Institute, Japanese Foundation for Cancer Research, Koto-ku, Tokyo, 135-8550, Japan. ehara@biken.osaka-u.ac.jp.
Tokyo University of Science · JPJapanese Foundation For Cancer Research · JPThe University of Osaka · JPJapan Science and Technology Agency · JPUniversity of Miami · US

Funding

The Role of STING in Innate ImmunityR01AI079336 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARBER, GLEN N. · 2008 to 2019
$3.9M
Vesicular Stomatitis Virus (VSV) Replication in Malignant CellsR01CA194404 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARBER, GLEN N. · 2015 to 2019
$1.7M
NCI NIH HHS R01 CA194404NIAID NIH HHS R01 AI079336
6 · The paper itself

Abstract

Accumulating evidence indicates that the senescence-associated secretory phenotype (SASP) contributes to many aspects of physiology and disease. Thus, controlling the SASP will have tremendous impacts on our health. However, our understanding of SASP regulation is far from complete. Here, we show that cytoplasmic accumulation of nuclear DNA plays key roles in the onset of SASP. Although both DNase2 and TREX1 rapidly remove the cytoplasmic DNA fragments emanating from the nucleus in pre-senescent cells, the expression of these DNases is downregulated in senescent cells, resulting in the cytoplasmic accumulation of nuclear DNA. This causes the aberrant activation of cGAS-STING cytoplasmic DNA sensors, provoking SASP through induction of interferon-β. Notably, the blockage of this pathway prevents SASP in senescent hepatic stellate cells, accompanied by a decline of obesity-associated hepatocellular carcinoma development in mice. These findings provide valuable new insights into the roles and mechanisms of SASP and possibilities for their control.

Indexed as

Cellular SenescenceDown-RegulationAnimalsCarcinoma, HepatocellularCell LineCytoplasmDeoxyribonucleasesDNA DamageDNA, Single-StrandedExodeoxyribonucleasesHepatic Stellate CellsHumansInterferon-betaLiverLiver NeoplasmsMaleDeoxyribonucleasesDNASE2 protein, humanDNA, Single-StrandedExodeoxyribonucleasesInterferon-betaPhosphoproteinsthree prime repair exonuclease 1

Identifiers

PMID29593264
PMCPMC5871854
OpenAlexW2805184558

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.