Evidence map›Paper›PMID 29593263›Full record

ArticleEmerging microbes & infections2018

Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections.

Primavera Alvarado, Marcus de Melo Teixeira, Lela Andrews, Alexis Fernandez, Gerardo Santander, Adina Doyle, Magaly Perez, Francisco Yegres, Bridget Marie Barker

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

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  6. From soil to clinic: current advances in understandingMicrobiology and molecular biology reviews : MMBR · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Primavera AlvaradoLaboratorio de Micología, Servicio Autonomo Instituto de Biomedicina Dr. Jacinto Convit, Caracas, 4043, Venezuela.
Marcus de Melo TeixeiraPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, 86011, USA.
Lela AndrewsEnvironmental Genetics and Genomics Laboratory, Northern Arizona University, Flagstaff, AZ, 86011, USA.ORCID http://orcid.org/0000-0002-7057-9957
Alexis FernandezLaboratorio de Inmunología II, Servicio Autónomo Instituto de Biomedicina Dr. Jacinto Convit, Caracas, 4043, Venezuela.
Gerardo SantanderLaboratory Geomatics, Universidad Bolivariana de Venezuela, Caracas, 1040, Venezuela.
Adina DoyleDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, 86005, USA.
Magaly PerezLaboratory Geomatics, Universidad Bolivariana de Venezuela, Caracas, 1040, Venezuela.
Francisco YegresLaboratorio de Investigación y Apoyo Docente del Santa Ana (LIADSA), Universidad Nacional Experimental Francisco de Miranda (UNEFM), Coro, 4101, Venezuela.
Bridget Marie BarkerPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, 86011, USA. bridget.barker@nau.edu.ORCID http://orcid.org/0000-0002-3439-4517
Northern Arizona University · USBolivarian University of Venezuela · VEInstitute for Biomedicine · ITTranslational Genomics Research Institute · USUniversidad Nacional Experimental Francisco de Miranda · VE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A wide range of mammals are susceptible to infection by the fungal species Coccidioides immitis and C. posadasii. In humans, 60% of infections are asymptomatic; however, certain patients may develop a severe and deep systemic mycosis called coccidioidomycosis. Genetic analysis suggests that the majority of clinical isolates recovered from South America are C. posadasii; however, little is known about the prevalence, species distribution, and ecological factors that favor the occurrence of this pathogen in those areas. By using a combined quantitative polymerase chain reaction (qPCR)-based approach and mycobiome amplicon sequencing, we provide evidence that at least two genotypes of C. posadasii are found in the xerophytic environment in Venezuela. We detected a 3806-fold range in the amount of Coccidioides DNA when comparing among the sampled locations, which indicates that human exposure risk is variable, and is one critical factor for disease manifestation. We identified fungal communities that are correlated with a higher prevalence of C. posadasii, suggesting that a combination of specific microbes and a xeric microenvironment may favor the growth of Coccidioides in certain locations. Moreover, we discuss the use of a combinatorial approach, using both qPCR and deep-sequencing methods to assess and monitor fungal pathogen burden at outbreak sources.

Indexed as

Soil MicrobiologyAnimalsCoccidioidesCoccidioidomycosisDisease OutbreaksGenotypeHigh-Throughput Nucleotide SequencingHumansMiceMycobiomeReal-Time Polymerase Chain ReactionVenezuela

Identifiers

PMID29593263
PMCPMC5874253
OpenAlexW2795325039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.