Evidence map›Paper›PMID 29593238›Full record

ArticleEmerging microbes & infections2018

Three Hcp homologs with divergent extended loop regions exhibit different functions in avian pathogenic Escherichia coli.

Jiale Ma, Min Sun, Zihao Pan, Wenchao Song, Chengping Lu, Huochun Yao

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. TagP, a PAAR-domain containing protein, plays roles in the fitness and virulence ofFrontiers in cellular and infection microbiology · 2024
    Article
  2. Review
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  8. Review
  9. Article
  10. VasH Contributes to Virulence ofFrontiers in veterinary science · 2021
    Article
  11. Frontiers in cellular and infection microbiology · 2020
    Article
  12. Article
  13. Article
  14. Type VI Secretion System in PathogenicFrontiers in microbiology · 2019
    Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jiale MaCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Min SunCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Zihao PanCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Wenchao SongCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Chengping LuCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Huochun YaoCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China. yaohch@njau.edu.cn.
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type VI secretion systems (T6SSs) contribute to the pathogenicity of avian pathogenic Escherichia coli (APEC), one of the leading causative agents of sepsis and meningitis in poultry. The Hcp protein is a core component of the T6SS tail tube and acts as an exported receptor and a chaperone of effectors. In this study, four distinct Hcp types (Ia, Ib, IIa, and IIb) were designated in Gram-negative bacteria, three of which were widely distributed in APEC. We detected divergence in transcription levels among three hcp clusters in 50% duck serum and demonstrated that hcp1 was upregulated by relieving Fur repression. Further analyses revealed that the host serum could activate the hcp2B operon by H-NS derepression to transcribe the downstream xmtU/xmtV pair for inter-bacterial antagonism. Notably, in a structural analysis based on the genetic classification, Hcp proteins exhibited significant differences in the extended loop regions, suggesting that these regions were related to their functional properties. Indeed, the variant region Vs2 (Loop L2, 3) in Hcp1 and Hcp2B was essential for the delivery of antibacterial effectors and the inhibition of macrophage phagocytosis. Further analyses using a duck model indicated that these Hcps play different roles in the pathogenic processes of APEC and immunoprotection. These results indicated that the functional differentiation of Hcp homologs was driven by differences in transcriptional regulation, extended loop regions, and effector delivery.

Indexed as

Sequence Homology, Amino AcidAnimalsAnti-Bacterial AgentsBirdsDucksEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsHumansIron-Sulfur ProteinsMacrophagesPhagocytosisTranscription, GeneticType VI Secretion SystemsVirulenceAnti-Bacterial AgentsEscherichia coli Proteinshybrid cluster protein, E coliIron-Sulfur ProteinsType VI Secretion Systems

Identifiers

PMID29593238
PMCPMC5874247
OpenAlexW2794684626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.