Evidence map›Paper›PMID 29590587›Full record

ArticleBiophysical journal2018

Cryo-EM Elucidation of the Structure of Bacteriophage P22 Virions after Genome Release.

Reginald McNulty, Giovanni Cardone, Eddie B Gilcrease, Timothy S Baker, Sherwood R Casjens, John E Johnson

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cryo-EM for Small Molecules.Current protocols · 2022
    Review
  6. Host Range Expansion ofJournal of virology · 2022
    Article
  7. High Resolution Structure of the Mature Capsid ofInternational journal of molecular sciences · 2021
    Article
  8. Structural changes in bacteriophage T7 upon receptor-induced genome ejection.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Structural Analysis of Jumbo Coliphage phAPEC6.International journal of molecular sciences · 2020
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Reginald McNultyLaboratory of Gene Regulation and Signal Transduction, Department of Pharmacology, School of Medicine, University of California, San Diego, La Jolla, California. Electronic address: rmcnulty@ucsd.edu.
Giovanni CardoneDepartment of Chemistry and BiochemistryUniversity of California, San Diego, La Jolla, California.
Eddie B GilcreaseDivision of Microbiology and Immunology, Pathology Department, University of Utah School of Medicine, Salt Lake City, Utah.
Timothy S BakerDepartment of Chemistry and BiochemistryUniversity of California, San Diego, La Jolla, California; Division of Biological Sciences, University of California, San Diego, La Jolla, California.
Sherwood R CasjensDivision of Microbiology and Immunology, Pathology Department, University of Utah School of Medicine, Salt Lake City, Utah.
John E JohnsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California. Electronic address: jackj@scripps.edu.
University of California San Diego · USUniversity of Utah · USScripps Research Institute · US

Funding

Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
MICROSCOPY &IMAGE ANALYSIS OF UNSTAINED MACROMOLECULESR01GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 1985 to 2017
$4.3M
DNA packaging and delivery by dsDNA virusesR01GM114817 · NIGMS · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2014 to 2017
$1.5M
Structural studies of bacteriophage genome packaging and ejectionF32GM108310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI MCNULTY, REGINALD · 2014 to 2016
$169k
NIEHS NIH HHS P42 ES010337NIGMS NIH HHS F32 GM108310NIGMS NIH HHS R01 GM033050NIGMS NIH HHS R01 GM114817
6 · The paper itself

Abstract

Genome ejection proteins are required to facilitate transport of bacteriophage P22 double-stranded DNA safely through membranes of Salmonella. The structures and locations of all proteins in the context of the mature virion are known, with the exception of three ejection proteins. Furthermore, the changes that occur to the proteins residing in the mature virion upon DNA release are not fully understood. We used cryogenic electron microscopy to obtain what is, to our knowledge, the first asymmetric reconstruction of mature bacteriophage P22 after double-stranded DNA has been extruded from the capsid-a state representative of one step during viral infection. Results of icosahedral and asymmetric reconstructions at estimated resolutions of 7.8 and 12.5 Å resolutions, respectively, are presented. The reconstruction shows tube-like protein density extending from the center of the tail assembly. The portal protein does not revert to the more contracted, procapsid state, but instead maintains an extended and splayed barrel structure. These structural details contribute to our understanding of the molecular mechanism of P22 phage infection and also set the foundation for future exploitation serving engineering purposes.

Indexed as

Cryoelectron MicroscopyBacteriophage P22DNA, ViralGenome, ViralVirionDNA, Viral

Identifiers

PMID29590587
PMCPMC5883611
OpenAlexW2794461419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.