Evidence map›Paper›PMID 29590088›Full record

ArticleNature2018

Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis.

Megan Sjodt, Kelly Brock, Genevieve Dobihal, Patricia D A Rohs, Anna G Green, Thomas A Hopf, Alexander J Meeske, Veerasak Srisuknimit, Daniel Kahne, Suzanne Walker and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Penicillin-Binding Proteins inAntibiotics (Basel, Switzerland) · 2026
    Review
  5. Article
  6. Article
  7. Peptidoglycan polymerase function and regulation.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  8. Article
  9. Journal of bacteriology · 2025
    Article
  10. Review
  11. Structural glycobiology - from enzymes to organelles.Biochemical Society transactions · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Elongasome core proteins and class A PBP1a display zonal, processive movement at the midcell ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Megan SjodtDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Kelly BrockDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Genevieve DobihalDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Patricia D A RohsDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Anna G GreenDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Thomas A HopfDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Alexander J MeeskeDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Veerasak SrisuknimitDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Daniel KahneDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Suzanne WalkerDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Debora S MarksDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Thomas G BernhardtDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
David Z RudnerDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Andrew C KruseDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Harvard University · USCenter for Systems Biology · US

Funding

Targeting bacterial cell wall biogenesis for the development of novel antimicrobU19AI109764 · NIAID · HARVARD MEDICAL SCHOOL · PI BELTZ, GERALD A · 2014 to 2018
$25.2M
Mechanism and Inhibition of Enzymes that Assemble Bacterial Cell WallR01GM076710 · NIGMS · HARVARD MEDICAL SCHOOL · PI WALKER, SUZANNE · 2007 to 2019
$5.9M
Accelerated Determination of 3D Structures of Proteins and ComplexesR01GM106303 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI SANDER, CHRIS · 2013 to 2016
$1.7M
NIAID NIH HHS U19 AI109764NIGMS NIH HHS R01 GM076710NIGMS NIH HHS R01 GM106303
6 · The paper itself

Abstract

The shape, elongation, division and sporulation (SEDS) proteins are a large family of ubiquitous and essential transmembrane enzymes with critical roles in bacterial cell wall biology. The exact function of SEDS proteins was for a long time poorly understood, but recent work has revealed that the prototypical SEDS family member RodA is a peptidoglycan polymerase-a role previously attributed exclusively to members of the penicillin-binding protein family. This discovery has made RodA and other SEDS proteins promising targets for the development of next-generation antibiotics. However, little is known regarding the molecular basis of SEDS activity, and no structural data are available for RodA or any homologue thereof. Here we report the crystal structure of Thermus thermophilus RodA at a resolution of 2.9 Å, determined using evolutionary covariance-based fold prediction to enable molecular replacement. The structure reveals a ten-pass transmembrane fold with large extracellular loops, one of which is partially disordered. The protein contains a highly conserved cavity in the transmembrane domain, reminiscent of ligand-binding sites in transmembrane receptors. Mutagenesis experiments in Bacillus subtilis and Escherichia coli show that perturbation of this cavity abolishes RodA function both in vitro and in vivo, indicating that this cavity is catalytically essential. These results provide a framework for understanding bacterial cell wall synthesis and SEDS protein function.

Indexed as

Bacillus subtilisBiocatalysisCell WallCrystallography, X-RayEscherichia coliModels, MolecularNucleotidyltransferasesPeptidoglycanProtein DomainsProtein FoldingStructure-Activity RelationshipThermus thermophilusNucleotidyltransferasesPeptidoglycan

Identifiers

PMID29590088
PMCPMC6035859
OpenAlexW2795292973

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.