Evidence map›Paper›PMID 29589903›Full record

ArticleBiochemistry2018

Changes in Protein Dynamics in Escherichia coli SufS Reveal a Possible Conserved Regulatory Mechanism in Type II Cysteine Desulfurase Systems.

Dokyong Kim, Harsimran Singh, Yuyuan Dai, Guangchao Dong, Laura S Busenlehner, F Wayne Outten, Patrick A Frantom

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Methods to Investigate the Kinetic Profile of Cysteine Desulfurases.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  6. Fe-S cluster biogenesis by the bacterial Suf pathway.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dokyong KimDepartment of Chemistry and Biochemistry , The University of Alabama , Tuscaloosa , Alabama 35487 , United States.
Harsimran SinghDepartment of Chemistry and Biochemistry , The University of Alabama , Tuscaloosa , Alabama 35487 , United States.
Yuyuan DaiDepartment of Chemistry and Biochemistry , The University of South Carolina , Columbia , South Carolina 29208 , United States.
Guangchao DongDepartment of Chemistry and Biochemistry , The University of South Carolina , Columbia , South Carolina 29208 , United States.
Laura S BusenlehnerDepartment of Chemistry and Biochemistry , The University of Alabama , Tuscaloosa , Alabama 35487 , United States.
F Wayne OuttenDepartment of Chemistry and Biochemistry , The University of South Carolina , Columbia , South Carolina 29208 , United States.ORCID 0000-0002-9095-0194
Patrick A FrantomDepartment of Chemistry and Biochemistry , The University of Alabama , Tuscaloosa , Alabama 35487 , United States.ORCID 0000-0001-7655-5967

Funding

Conformational dynamics and allosteric regulation during stress-responsive metallocofactor assemblyR01GM112919 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI Patrick Frantom · 2015 to 2026
$2.8M
NIGMS NIH HHS R01 GM112919
6 · The paper itself

Abstract

In the Suf Fe-S cluster assembly pathway, the activity of the cysteine desulfurase, SufS, is regulated by interactions with the accessory sulfotransferase protein, SufE. SufE has been shown to stimulate SufS activity, likely by inducing conformational changes in the SufS active site that promote the desulfurase step and by acting as an efficient persulfide acceptor in the transpersulfuration step. Previous results point toward an additional level of regulation through a "half-sites" mechanism that affects the stoichiometry and affinity for SufE as the dimeric SufS shifts between desulfurase and transpersulfuration activities. Investigation of the covalent persulfide intermediate of SufS by backbone amide hydrogen-deuterium exchange mass spectrometry identified two active site peptides (residues 225-236 and 356-366) and two peptides at the dimer interface of SufS (residues 88-100 and 243-255) that exhibit changes in deuterium uptake upon formation of the intermediate. Residues in these peptides are organized to form a conduit between the two active sites upon persulfide formation and include key cross-monomer interactions, suggesting they may play a role in the half-sites regulation. Three evolutionarily conserved residues at the dimer interface (R92, E96, and E250) were investigated by alanine scanning mutagenesis. Two of the substituted enzymes (E96A and E250A SufS) resulted in 6-fold increases in the value of K

Indexed as

Amino Acid SequenceAmino Acid SubstitutionCarbon-Sulfur LyasesCatalytic DomainEscherichia coliLyasesMutagenesis, Site-DirectedProtein ConformationSulfurCarbon-Sulfur Lyasescysteine desulfuraseLyasesselenocysteine lyaseSulfur

Identifiers

PMID29589903
PMCPMC6707828

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.