Evidence map›Paper›PMID 29588665›Full record

ArticleBiotechnology for biofuels2018

The diversity and specificity of the extracellular proteome in the cellulolytic bacterium

Suresh Poudel, Richard J Giannone, Mirko Basen, Intawat Nookaew, Farris L Poole, Robert M Kelly, Michael W W Adams, Robert L Hettich

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Suresh Poudel1Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.
Richard J Giannone2Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.
Mirko Basen5Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA.
Intawat Nookaew1Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.
Farris L Poole3BioEnergy Science Center at Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.
Robert M Kelly3BioEnergy Science Center at Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.
Michael W W Adams3BioEnergy Science Center at Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.
Robert L Hettich2Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA.ORCID 0000-0001-7708-786X
Oak Ridge National Laboratory · USGoethe University Frankfurt · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background

resultsProteomic analysis revealed several key extracellular proteins that respond specifically to either C5 or C6 mono- and polysaccharides. These include proteins of unknown functions (PUFs), ESBPs, and CAZymes. ESBPs that were previously shown to interact more efficiently with hemicellulose and pectin were detected in high abundance during growth on complex C5 substrates, such as switchgrass and xylan. Some proteins, such as Athe_0614 and Athe_2368, whose functions are not well defined were predicted to be involved in xylan utilization and ABC transport and were significantly more abundant in complex and C5 substrates, respectively. The proteins encoded by the entire glucan degradation locus (GDL; Athe_1857, 1859, 1860, 1865, 1867, and 1866) were highly abundant under all growth conditions, particularly when

conclusionsThis study reveals the protein membership of the

Indexed as

AvicelC5 substratesC6 substratesCaldicellulosiruptor besciiCarbohydrate-active enzymes (CAZymes)ExtracellularExtracellular solute binding proteins (ESBPs)Glycosyl hydrolases (GH)LignocellulosicMass spectrometryProtein of unknown function (PUF)SwitchgrassXylan

Identifiers

PMID29588665
PMCPMC5865380
OpenAlexW2803290567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.