Evidence map›Paper›PMID 29588496›Full record

ArticleScientific reports2018

Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure.

Håvard Ø Eggestøl, Harald S Lunde, Anita Rønneseth, David Fredman, Kjell Petersen, Charitra K Mishra, Tomasz Furmanek, Duncan J Colquhoun, Heidrun I Wergeland, Gyri T Haugland

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Hepatic melanomacrophage centers in the arctic cultured fishAquaculture (Amsterdam, Netherlands) · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Immune Response and Apoptosis-Related Pathways Induced byPathogens (Basel, Switzerland) · 2021
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Håvard Ø EggestølDepartment of Biology, University of Bergen, Bergen, Norway.
Harald S LundeDepartment of Biology, University of Bergen, Bergen, Norway.
Anita RønnesethDepartment of Biology, University of Bergen, Bergen, Norway.
David FredmanComputational biology unit, Department of Informatics, University of Bergen, Bergen, Norway.
Kjell PetersenComputational biology unit, Department of Informatics, University of Bergen, Bergen, Norway.
Charitra K MishraComputational biology unit, Department of Informatics, University of Bergen, Bergen, Norway.
Tomasz FurmanekComputational biology unit, Department of Informatics, University of Bergen, Bergen, Norway.
Duncan J ColquhounDepartment of Biology, University of Bergen, Bergen, Norway.
Heidrun I WergelandDepartment of Biology, University of Bergen, Bergen, Norway.
Gyri T HauglandDepartment of Biology, University of Bergen, Bergen, Norway. Gyri.Haugland@bio.uib.no.
University of Bergen · NONorwegian Veterinary Institute · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We performed RNA sequencing, identified components of the immune system and mapped early immune responses of lumpfish (Cyclopterus lumpus) leukocytes following in vitro exposure to the pathogenic bacterium Vibrio anguillarum O1. This is the first characterization of immune molecules in lumpfish at the gene level. In silico analyses revealed that genes encoding proteins involved in pathogen recognition, cell signaling and cytokines in mammals and teleosts are conserved in lumpfish. Unique molecules were also identified. Pathogen recognition components include 13 TLRs, several NLRs and complement factors. Transcriptome-wide analyses of immune responses 6 and 24 hours post bacterial exposure revealed differential expression of 9033 and 15225 genes, respectively. These included TLR5S, IL-1β, IL-8, IL-6, TNFα, IL-17A/F3, IL-17C and several components of the complement system. The data generated will be valuable for comparative studies and make an important basis for further functional analyses of immune and pathogenicity mechanisms. Such knowledge is also important for design of immunoprophylactic measures in lumpfish, a species of fish now farmed intensively for use as cleaner-fish in Atlantic salmon (Salmo salar) aquaculture.

Indexed as

TranscriptomeAnimalsAquacultureBacteriaBacterial InfectionsBase SequenceComplement ActivationFish DiseasesGene Expression RegulationImmunity, InnateLeukocytesPerciformes

Identifiers

PMID29588496
PMCPMC5869700
OpenAlexW2805442208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.