Evidence map›Paper›PMID 29587653›Full record

ArticleBMC genetics2018

Efficient anchoring of alien chromosome segments introgressed into bread wheat by new Leymus racemosus genome-based markers.

Offiong Ukpong Edet, June-Sik Kim, Masanori Okamoto, Kousuke Hanada, Tomoyuki Takeda, Masahiro Kishii, Yasir Serag Alnor Gorafi, Hisashi Tsujimoto

Abstract read
In one paragraph

Article in BMC genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. The transfer of 98% of the genome of Aegilops mutica into wheat (Triticum aestivum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  2. Article
  3. Alien Chromatin from Hordeeae Grasses Enhances the Compatibility ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. Transfer of theFrontiers in plant science · 2022
    Article
  5. Enlisting wild grass genes to combat nitrification in wheat farming: A nature-based solution.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Offiong Ukpong EdetArid Land Research Center, Tottori University, Tottori, Japan.
June-Sik KimRIKEN Center for Sustainable Resource Science, Tsukuba, Ibaraki, 305-0074, Japan.
Masanori OkamotoCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.
Kousuke HanadaDepartment of Bioscience and Bioinformatics, Kyushu Institute of Technology, Kitakyushu, Japan.
Tomoyuki TakedaDepartment of Bioscience and Bioinformatics, Kyushu Institute of Technology, Kitakyushu, Japan.
Masahiro KishiiInternational Maize and Wheat Improvement Center (CIMMYT), El Batan, Mexico.
Yasir Serag Alnor GorafiArid Land Research Center, Tottori University, Tottori, Japan.
Hisashi TsujimotoArid Land Research Center, Tottori University, Tottori, Japan. tsujim@alrc.tottori-u.ac.jp.ORCID 0000-0003-0203-0759

Funding

DNA SAMPLE ANALYSIS27307C2007 · NIEHS · PI LEHMAN, TERESA · 2007 to 2007
$74k
NIEHS NIH HHS 27307C2007
6 · The paper itself

Abstract

backgroundThe tertiary gene pool of bread wheat, to which Leymus racemosus belongs, has remained underutilized due to the current limited genomic resources of the species that constitute it. Continuous enrichment of public databases with useful information regarding these species is, therefore, needed to provide insights on their genome structures and aid successful utilization of their genes to develop improved wheat cultivars for effective management of environmental stresses.

resultsWe generated de novo DNA and mRNA sequence information of L. racemosus and developed 110 polymorphic PCR-based markers from the data, and to complement the PCR markers, DArT-seq genotyping was applied to develop additional 9990 SNP markers. Approximately 52% of all the markers enabled us to clearly genotype 22 wheat-L. racemosus chromosome introgression lines, and L. racemosus chromosome-specific markers were highly efficient in detailed characterization of the translocation and recombination lines analyzed. A further analysis revealed remarkable transferability of the PCR markers to three other important Triticeae perennial species: L. mollis, Psathyrostachys huashanica and Elymus ciliaris, indicating their suitability for characterizing wheat-alien chromosome introgressions carrying chromosomes of these genomes.

conclusionThe efficiency of the markers in characterizing wheat-L. racemosus chromosome introgression lines proves their reliability, and their high transferability further broadens their scope of application. This is the first report on sequencing and development of markers from L. racemosus genome and the application of DArT-seq to develop markers from a perennial wild relative of wheat, marking a paradigm shift from the seeming concentration of the technology on cultivated species. Integration of these markers with appropriate cytogenetic methods would accelerate development and characterization of wheat-alien chromosome introgression lines.

Indexed as

BreadChromosomes, PlantPlant BreedingChromosome MappingCytogenetic AnalysisGenetic MarkersPoaceaeSequence Analysis, DNASequence Analysis, RNATriticumGenetic MarkersChromosome introgression lines (5)DArT-seq (3)Genome sequencing (4)Leymus racemosus (1)Molecular markers (2)Salinity stress (6)Triticeae (7)

Identifiers

PMID29587653
PMCPMC5872505

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.