Evidence map›Paper›PMID 29581582›Full record

ArticleNature chemical biology2018

Unfolding of a ClC chloride transporter retains memory of its evolutionary history.

Duyoung Min, Robert E Jefferson, Yifei Qi, Jing Yang Wang, Mark A Arbing, Wonpil Im, James U Bowie

Abstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Folding speeds of helical membrane proteins.Biochemical Society transactions · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Untangling the complexity of membrane protein folding.Current opinion in structural biology · 2022
    Review
  15. Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Linking function to global and local dynamics in an elevator-type transporter.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Review
  18. Membrane proteins enter the fold.Current opinion in structural biology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Duyoung MinDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-2856-8082
Robert E JeffersonDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.
Yifei QiSchool of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China.
Jing Yang WangDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.
Mark A ArbingDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.
Wonpil ImDepartments of Biological Sciences and Bioengineering, Lehigh University, Bethlehem, PA, USA.
James U BowieDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA. bowie@mbi.ucla.edu.
University of California, Los Angeles · USEast China Normal University · CNLehigh University · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHOU, MING · 2010 to 2017
$31.9M
Membrane Protein StabilityR01GM063919 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOWIE, JAMES U · 2001 to 2021
$5.6M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
A SAM domain network in Polycystic Kidney DiseaseR01DK100482 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOWIE, JAMES U · 2014 to 2017
$1.1M
NIDDK NIH HHS R01 DK100482NIGMS NIH HHS R01 GM063919NIGMS NIH HHS R01 GM116961NIGMS NIH HHS U54 GM087519
6 · The paper itself

Abstract

ClC chloride channels and transporters are important for chloride homeostasis in species from bacteria to human. Mutations in ClC proteins cause genetically inherited diseases, some of which are likely to involve folding defects. The ClC proteins present a challenging and unusual biological folding problem because they are large membrane proteins possessing a complex architecture, with many reentrant helices that go only partway through membrane and loop back out. Here we were able to examine the unfolding of the Escherichia coli ClC transporter, ClC-ec1, using single-molecule forced unfolding methods. We found that the protein could be separated into two stable halves that unfolded independently. The independence of the two domains is consistent with an evolutionary model in which the two halves arose from independently folding subunits that later fused together. Maintaining smaller folding domains of lesser complexity within large membrane proteins may be an advantageous strategy to avoid misfolding traps.

Indexed as

Chloride ChannelsChloridesDimyristoylphosphatidylcholineDNAEscherichia coliEscherichia coli ProteinsEvolution, MolecularHumansMembrane Transport ProteinsMolecular Dynamics SimulationMutationPlasmidsProtein DenaturationProtein DomainsProtein FoldingProtein MultimerizationChloride ChannelsChloridesDimyristoylphosphatidylcholineDNAEscherichia coli ProteinsMembrane Transport Proteins

Identifiers

PMID29581582
PMCPMC6038805
OpenAlexW2795901576

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.