Evidence map›Paper›PMID 29581525›Full record

ArticleScientific reports2018

Innate immune system activation in zebrafish and cellular models of Diamond Blackfan Anemia.

Nadia Danilova, Mark Wilkes, Elena Bibikova, Min-Young Youn, Kathleen M Sakamoto, Shuo Lin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. One Host-Multiple Applications: Zebrafish (International journal of molecular sciences · 2022
    Review
  7. Article
  8. Review
  9. Zebrafish models of inflammation in hematopoietic development and disease.Frontiers in cell and developmental biology · 2022
    Review
  10. Evaluation of the effects ofToxicology reports · 2022
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Modeling hematopoietic disorders in zebrafish.Disease models & mechanisms · 2019
    Review
  19. Zebrafish Models of Rare Hereditary Pediatric Diseases.Diseases (Basel, Switzerland) · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nadia DanilovaDepartment of Molecular, Cell & Developmental Biology, University of California, Los Angeles, CA, USA.
Mark WilkesDepartment of Pediatrics Stanford University School of Medicine, Stanford, CA, USA.
Elena BibikovaDepartment of Pediatrics Stanford University School of Medicine, Stanford, CA, USA.
Min-Young YounDepartment of Pediatrics Stanford University School of Medicine, Stanford, CA, USA.
Kathleen M SakamotoDepartment of Pediatrics Stanford University School of Medicine, Stanford, CA, USA. kmsakamo@stanford.edu.
Shuo LinDepartment of Molecular, Cell & Developmental Biology, University of California, Los Angeles, CA, USA. shuolin@ucla.edu.
Stanford University · USUniversity of California, Los Angeles · US

Funding

Training in Pediatric Nonmalignant Hematology and Stem Cell BiologyT32DK098132 · NIDDK · STANFORD UNIVERSITY · PI SAKAMOTO, KATHLEEN M · 2014 to 2022
$1.9M
Molecular Pathogenesis of Diamond Blackfan AnemiaR01HL097561 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LIN, SHUO, SAKAMOTO, KATHLEEN M · 2010 to 2013
$1.7M
Signaling Pathways in MDSR01DK107286 · NIDDK · STANFORD UNIVERSITY · PI SAKAMOTO, KATHLEEN M · 2016 to 2019
$1.4M
NHLBI NIH HHS R01 HL097561NIDDK NIH HHS R01 DK107286NIDDK NIH HHS T32 DK098132
6 · The paper itself

Abstract

Deficiency of ribosomal proteins (RPs) leads to Diamond Blackfan Anemia (DBA) associated with anemia, congenital defects, and cancer. While p53 activation is responsible for many features of DBA, the role of immune system is less defined. The Innate immune system can be activated by endogenous nucleic acids from non-processed pre-rRNAs, DNA damage, and apoptosis that occurs in DBA. Recognition by toll like receptors (TLRs) and Mda5-like sensors induces interferons (IFNs) and inflammation. Dying cells can also activate complement system. Therefore we analyzed the status of these pathways in RP-deficient zebrafish and found upregulation of interferon, inflammatory cytokines and mediators, and complement. We also found upregulation of receptors signaling to IFNs including Mda5, Tlr3, and Tlr9. TGFb family member activin was also upregulated in RP-deficient zebrafish and in RPS19-deficient human cells, which include a lymphoid cell line from a DBA patient, and fetal liver cells and K562 cells transduced with RPS19 shRNA. Treatment of RP-deficient zebrafish with a TLR3 inhibitor decreased IFNs activation, acute phase response, and apoptosis and improved their hematopoiesis and morphology. Inhibitors of complement and activin also had beneficial effects. Our studies suggest that innate immune system contributes to the phenotype of RPS19-deficient zebrafish and human cells.

Indexed as

Activin ReceptorsActivinsAnemia, Diamond-BlackfanAnimalsArginineBenzamidesBenzhydryl CompoundsComplement C3aDioxolesDisease Models, AnimalHumansImmunity, InnateInterferonsK562 CellsReceptor, Transforming Growth Factor-beta Type IRibosomal Proteins4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideActivin ReceptorsActivinsArginineBenzamidesBenzhydryl CompoundsComplement C3aDioxolesInterferonsReceptor, Transforming Growth Factor-beta Type IRibosomal Proteinsribosomal protein S19RNA, Small InterferingRPS19 protein, zebrafishSB 290157TLR3 protein, humanToll-Like Receptor 3Transforming Growth Factor betaTumor Suppressor Protein p53Zebrafish Proteins

Identifiers

PMID29581525
PMCPMC5980095
OpenAlexW2794495497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.