ArticleScientific reports2018
Analysis of microsatellites from transcriptome sequences of Phytophthora capsici and applications for population studies.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- A transcriptome-wide approach for rapid pathotype discrimination of Puccinia striiformis f. sp. tritici in north-western India.Archives of microbiology · 2026Article
- Transcriptome analysis provides new insights into the resistance of pepper to Phytophthora capsici infection.BMC genomics · 2025Article
- Polymorphic Microsatellite Development, Genetic Diversity, Population Differentiation and Sexual State of Phytophthora capsici on Commercial Peppers in Three Provinces of Southwest China.Applied and environmental microbiology · 2022Article
- Comparative Genome Analysis Across 128Frontiers in microbiology · 2022Article
- High Genetic Diversity in Predominantly Clonal Populations of the Powdery Mildew FungusApplied and environmental microbiology · 2021Article
- High-Quality Reference Genome Sequence for the Oomycete Vegetable Pathogen Phytophthora capsici Strain LT1534.Microbiology resource announcements · 2021Article
- Population Genetic Analyses ofFrontiers in microbiology · 2021Article
- Integration analysis of PacBio SMRT- and Illumina RNA-seq reveals candidate genes and pathway involved in selenium metabolism in hyperaccumulator Cardamine violifolia.BMC plant biology · 2020Article
- Differential Potential ofMicroorganisms · 2020Article
- Tissue-specific synergistic bio-priming of pepper by two Streptomyces species against Phytophthora capsici.PloS one · 2020Article
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2 authors.
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Abstract
Phytophthora capsici is a devastating oomycete that affects solanaceous, cucurbitaceous, fabaceous, and other crops in the United States (US) and worldwide. The release of the P. capsici genome allows for design of robust markers for genetic studies. We identified and characterized microsatellites in the P. capsici transcriptome. A subset of 50 microsatellites were assayed in a diverse set of P. capsici isolates and evaluated for polymorphism. Polymorphic microsatellites were confirmed by fragment analysis, and 12 were used for population characterization of 50 P. capsici isolates from different states, hosts, and mating types. Analysis of genetic relationship among isolates revealed significant geographic structure by state. Our findings highlight the usefulness of these 12 microsatellites to characterize the population structure of P. capsici and potential transferability to closely-related Phytophthora spp. since markers are located in coding regions. Our markers will facilitate genetic characterization and complement phenotypic studies of P. capsici populations, which may assist in deployment of disease management strategies.
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