Evidence map›Paper›PMID 29581462›Full record

ArticleScientific reports2018

Persistent random deformation model of cells crawling on a gel surface.

Hiroyuki Ebata, Aki Yamamoto, Yukie Tsuji, Saori Sasaki, Kousuke Moriyama, Thasaneeya Kuboki, Satoru Kidoaki

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Random walk and cell morphology dynamics inFrontiers in cell and developmental biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hiroyuki EbataLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan. ebata@ms.ifoc.kyushu-u.ac.jp.
Aki YamamotoLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Yukie TsujiLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Saori SasakiLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Kousuke MoriyamaLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Thasaneeya KubokiLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Satoru KidoakiLaboratory of Biomedical and Biophysical Chemistry, Institute for Materials Chemistry and Engineering, Kyushu University, CE41-204, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan. kidoaki@ms.ifoc.kyushu-u.ac.jp.
Kyushu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In general, cells move on a substrate through extension and contraction of the cell body. Though cell movement should be explained by taking into account the effect of such shape fluctuations, past approaches to formulate cell-crawling have not sufficiently quantified the relationship between cell movement (velocity and trajectory) and shape fluctuations based on experimental data regarding actual shaping dynamics. To clarify this relationship, we experimentally characterized cell-crawling in terms of shape fluctuations, especially extension and contraction, by using an elasticity-tunable gel substrate to modulate cell shape. As a result, an amoeboid swimmer-like relation was found to arise between the cell velocity and cell-shape dynamics. To formulate this experimentally-obtained relationship between cell movement and shaping dynamics, we established a persistent random deformation (PRD) model based on equations of a deformable self-propelled particle adopting an amoeboid swimmer-like velocity-shape relationship. The PRD model successfully explains the statistical properties of velocity, trajectory and shaping dynamics of the cells including back-and-forth motion, because the velocity equation exhibits time-reverse symmetry, which is essentially different from previous models. We discuss the possible application of this model to classify the phenotype of cell migration based on the characteristic relation between movement and shaping dynamics.

Indexed as

Models, BiologicalAmoebaAnimalsCell MovementCell ShapeElasticityFibroblastsFourier AnalysisHydrogel, Polyethylene Glycol DimethacrylateMiceNIH 3T3 CellsPhenotypeHydrogel, Polyethylene Glycol Dimethacrylate

Identifiers

PMID29581462
PMCPMC5980085
OpenAlexW2792912405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.