ArticleScientific reports2018
Whole Genome Resequencing of Capsicum baccatum and Capsicum annuum to Discover Single Nucleotide Polymorphism Related to Powdery Mildew Resistance.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 39 citations in OpenAlex.
- SLAF-seq technology-based genome-wide association and population structure analyses of hot pepper and sweet pepper.BMC genomics · 2025Article
- Genome-Wide Identification and Characterization of SNPs and InDels ofPlants (Basel, Switzerland) · 2024Article
- The landscape of sequence variations between resistant and susceptible hot peppers to predict functional candidate genes against bacterial wilt disease.BMC plant biology · 2024Article
- Genome-wide association study and candidate gene identification for agronomic traits in 182 upward-growing fruits of C. frutescens and C. annuum.Scientific reports · 2024Article
- Whole-genome resequencing reveals genomic footprints of Italian sweet and hot pepper heirlooms giving insight into genes underlying key agronomic and qualitative traits.BMC genomic data · 2022Article
- Genotyping by Sequencing-Based Discovery of SNP Markers and Construction of Linkage Map from FBioMed research international · 2021Article
- Transcriptome-Based Identification and Functional Characterization of NAC Transcription Factors Responsive to Drought Stress inFrontiers in genetics · 2021Article
- Genome-Wide Development and Validation of Cost-Effective KASP Marker Assays for Genetic Dissection of Heat Stress Tolerance in Maize.International journal of molecular sciences · 2020Article
- Genome-Wide Correlation of 36 Agronomic Traits in the 287 Pepper (International journal of molecular sciences · 2019Article
- Development and Application of InDel Markers for Capsicum spp. Based on Whole-Genome Re-Sequencing.Scientific reports · 2019Article
- Genetic diversity and structure ofHereditas · 2019Article
- Transcriptome sequencing assisted discovery and computational analysis of novel SNPs associated with flowering inHorticulture research · 2019Article
- Genetic diversity, population structure, and relationships in a collection of pepper (Horticulture research · 2019Article
- Genome sequences of horticultural plants: past, present, and future.Horticulture research · 2019Review
Corrections and comments
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The present study deals with genome wide identification of single-nucleotide polymorphism (SNP) markers related to powdery mildew (PM) resistance in two pepper varieties. Capsicum baccatum (PRH1- a PM resistant line) and Capsicum annuum (Saengryeg- a PM susceptible line), were resequenced to develop SNP markers. A total of 6,213,009 and 6,840,889 SNPs for PRH1 and Saengryeg respectively have been discovered. Among the SNPs, majority were classified as homozygous type SNPs, particularly in the resistant line. Moreover, the SNPs were differentially distributed among the chromosomes in both the resistant and susceptible lines. In total, 4,887,031 polymorphic SNP loci were identified between the two lines and 306,871 high-resolution melting (HRM) marker primer sets were designed. In order to understand the SNPs associated with the vital genes involved in diseases resistance and stress associated processes, chromosome-wise gene ontology analysis was performed. The results revealed the occurrence that SNPs related to diseases resistance genes were predominantly distributed in chromosome 4. In addition, 6281 SNPs associated with 46 resistance genes were identified. Among the lines, PRH1 consisted of maximum number of polymorphic SNPs related to NBS-LRR genes. The SNP markers were validated using HRM assay in 45 F
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