Evidence map›Paper›PMID 29581303›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Structural basis for the ethanol action on G-protein-activated inwardly rectifying potassium channel 1 revealed by NMR spectroscopy.

Yuki Toyama, Hanaho Kano, Yoko Mase, Mariko Yokogawa, Masanori Osawa, Ichio Shimada

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. The Lipid Activation Mechanism of a Transmembrane Potassium Channel.Journal of the American Chemical Society · 2020
    Article
  4. Article
  5. Conformational equilibrium defines the variable induction of the multidrug-binding transcriptional repressor QacR.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yuki ToyamaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, 113-0033 Tokyo, Japan.
Hanaho KanoGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, 113-0033 Tokyo, Japan.
Yoko MaseGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, 113-0033 Tokyo, Japan.
Mariko YokogawaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, 113-0033 Tokyo, Japan.
Masanori OsawaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, 113-0033 Tokyo, Japan.
Ichio ShimadaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, 113-0033 Tokyo, Japan; shimada@iw-nmr.f.u-tokyo.ac.jp.
The University of Tokyo · JPJapan Biological Informatics Consortium · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ethanol consumption leads to a wide range of pharmacological effects by acting on the signaling proteins in the human nervous system, such as ion channels. Despite its familiarity and biological importance, very little is known about the molecular mechanisms underlying the ethanol action, due to extremely weak binding affinity and the dynamic nature of the ethanol interaction. In this research, we focused on the primary in vivo target of ethanol, G-protein-activated inwardly rectifying potassium channel (GIRK), which is responsible for the ethanol-induced analgesia. By utilizing solution NMR spectroscopy, we characterized the changes in the structure and dynamics of GIRK induced by ethanol binding. We demonstrated here that ethanol binds to GIRK with an apparent dissociation constant of 1.0 M and that the actual physiological binding site of ethanol is located on the cavity formed between the neighboring cytoplasmic regions of the GIRK tetramer. From the methyl-based NMR relaxation analyses, we revealed that ethanol activates GIRK by shifting the conformational equilibrium processes, which are responsible for the gating of GIRK, to stabilize an open conformation of the cytoplasmic ion gate. We suggest that the dynamic molecular mechanism of the ethanol-induced activation of GIRK represents a general model of the ethanol action on signaling proteins in the human nervous system.

Indexed as

Allosteric RegulationAnimalsBinding SitesEthanolG Protein-Coupled Inwardly-Rectifying Potassium ChannelsKineticsMagnetic Resonance SpectroscopyMiceProtein ConformationProtein DomainsEthanolG Protein-Coupled Inwardly-Rectifying Potassium ChannelsethanolGIRKion channelsNMR

Identifiers

PMID29581303
PMCPMC5899474
OpenAlexW2797037888

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.