Evidence map›Paper›PMID 29581294›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Crystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state.

Xi Zhang, Qifan Wang, Jianping Wu, Jiawei Wang, Yigong Shi, Minhao Liu

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 89 citations in OpenAlex.

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  15. LOXL2 in Cancer: A Two-Decade Perspective.International journal of molecular sciences · 2023
    Review
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  18. [Relationship between trace elements in synovial fluid and cartilage and severity of knee osteoarthritis].Zhongguo xiu fu chong jian wai ke za zhi = Zhongguo xiufu chongjian waike zazhi = Chinese journal of reparative and reconstructive surgery · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Xi ZhangBeijing Advanced Innovation Center for Structural Biology, Tsinghua University, 100084 Beijing, China.
Qifan WangBeijing Advanced Innovation Center for Structural Biology, Tsinghua University, 100084 Beijing, China.
Jianping WuBeijing Advanced Innovation Center for Structural Biology, Tsinghua University, 100084 Beijing, China.
Jiawei WangBeijing Advanced Innovation Center for Structural Biology, Tsinghua University, 100084 Beijing, China.
Yigong ShiBeijing Advanced Innovation Center for Structural Biology, Tsinghua University, 100084 Beijing, China; shi-lab@tsinghua.edu.cn liuminhao@biomed.tsinghua.edu.cn.
Minhao LiuBeijing Advanced Innovation Center for Structural Biology, Tsinghua University, 100084 Beijing, China; shi-lab@tsinghua.edu.cn liuminhao@biomed.tsinghua.edu.cn.
Tsinghua University · CNCenter for Life Sciences · CNBeijing Advanced Sciences and Innovation Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lysyl oxidases (LOXs), a type of copper- and lysyl tyrosylquinone (LTQ) -dependent amine oxidase, catalyze the oxidative deamination of lysine residues of extracellular matrix (ECM) proteins such as elastins and collagens and generate aldehyde groups. The oxidative deamination of lysine represents the foundational step for the cross-linking of elastin and collagen and thus is crucial for ECM modeling. Despite their physiological significance, the structure of this important family of enzymes remains elusive. Here we report the crystal structure of human lysyl oxidase-like 2 (hLOXL2) at 2.4-Å resolution. Unexpectedly, the copper-binding site of hLOXL2 is occupied by zinc, which blocks LTQ generation and the enzymatic activity of hLOXL2 in our in vitro assay. Biochemical analysis confirms that copper loading robustly activates hLOXL2 and supports LTQ formation. Furthermore, the LTQ precursor residues in the structure are distanced by 16.6 Å, corroborating the notion that the present structure may represent a precursor state and that pronounced conformational rearrangements would be required for protein activation. The structure presented here establishes an important foundation for understanding the structure-function relationship of LOX proteins and will facilitate LOX-targeting drug discovery.

Indexed as

Amino Acid MotifsAmino Acid OxidoreductasesCatalysisCopperCrystallography, X-RayHumansLysineQuinonesZincAmino Acid OxidoreductasesCopperLOXL2 protein, humanLysinelysyl tyrosylquinoneQuinonesZinccrystal structurehuman LOXL2lysyl oxidaseprecursor state

Identifiers

PMID29581294
PMCPMC5899467
OpenAlexW2790296917

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.