Evidence map›Paper›PMID 29581148›Full record

ArticleMolecular systems biology2018

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease.

Seth A Ament, Jocelynn R Pearl, Jeffrey P Cantle, Robert M Bragg, Peter J Skene, Sydney R Coffey, Dani E Bergey, Vanessa C Wheeler, Marcy E MacDonald, Nitin S Baliga and 4 more

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Hydrogen Sulfide Signaling in Neurodegenerative Movement Disorders.Handbook of experimental pharmacology · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Revisiting the outcome of adult wild-typeBrain communications · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Modelling the Human Blood-Brain Barrier in Huntington Disease.International journal of molecular sciences · 2022
    Article
  17. Review
  18. Review
  19. Machine Learning in Drug Discovery: A Review.Artificial intelligence review · 2022
    Article
  20. DNA Methylation in Huntington's Disease.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 1 country.

Seth A AmentInstitute for Systems Biology, Seattle, WA, USA.
Jocelynn R PearlInstitute for Systems Biology, Seattle, WA, USA.
Jeffrey P CantleBehavioral Neuroscience Program, Department of Psychology, Western Washington University, Bellingham, WA, USA.
Robert M BraggBehavioral Neuroscience Program, Department of Psychology, Western Washington University, Bellingham, WA, USA.
Peter J SkeneBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Sydney R CoffeyBehavioral Neuroscience Program, Department of Psychology, Western Washington University, Bellingham, WA, USA.
Dani E BergeyInstitute for Systems Biology, Seattle, WA, USA.
Vanessa C WheelerMolecular Neurogenetics Unit, Center for Human Genetic Research, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Marcy E MacDonaldMolecular Neurogenetics Unit, Center for Human Genetic Research, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Nitin S BaligaInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0001-9157-5974
Jim RosinskiCHDI Management, CHDI Foundation, Princeton, NJ, USA.
Leroy E HoodInstitute for Systems Biology, Seattle, WA, USA.
Jeffrey B CarrollBehavioral Neuroscience Program, Department of Psychology, Western Washington University, Bellingham, WA, USA.ORCID 0000-0003-1711-8868
Nathan D PriceInstitute for Systems Biology, Seattle, WA, USA nprice@systemsbiology.org.ORCID 0000-0002-4157-0267
Institute for Systems Biology · USWestern Washington University · USHarvard University · USCHDI Foundation · USFred Hutch Cancer Center · USUniversity of Maryland, Baltimore · USUniversity of Washington · US

Funding

Huntington's Disease Repeat Instability and PathogenesisR01NS049206 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI VANESSA C WHEELER · 2005 to 2026
$10.0M
NINDS NIH HHS R01 NS049206
6 · The paper itself

Abstract

Transcriptional changes occur presymptomatically and throughout Huntington's disease (HD), motivating the study of transcriptional regulatory networks (TRNs) in HD We reconstructed a genome-scale model for the target genes of 718 transcription factors (TFs) in the mouse striatum by integrating a model of genomic binding sites with transcriptome profiling of striatal tissue from HD mouse models. We identified 48 differentially expressed TF-target gene modules associated with age- and CAG repeat length-dependent gene expression changes in

Indexed as

Gene Regulatory NetworksAnimalsCorpus StriatumDisease Models, AnimalGene Expression ProfilingGene Expression RegulationHumansHuntington DiseaseMiceProtein Interaction MapsProteomicsSmad3 ProteinTranscription FactorsSmad3 ProteinSMAD3 protein, humanTranscription FactorsHuntington's diseaseSMAD3transcriptional regulatory networkstranscription factor

Identifiers

PMID29581148
PMCPMC5868199
OpenAlexW2790008564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.