Evidence map›Paper›PMID 29580206›Full record

ArticleBMC evolutionary biology2018

Correlates of evolutionary rates in the murine sperm proteome.

Julia Schumacher, Holger Herlyn

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  3. The chromosome-level genome of the submerged plant Cryptocoryne crispatula provides insights into the terrestrial-freshwater transition in Araceae.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
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  4. Article
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  6. Article
  7. Molecular Evolution across Mouse Spermatogenesis.Molecular biology and evolution · 2022
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Julia SchumacherInstitute of Organismic and Molecular Evolution, Anthropology, Johannes Gutenberg University, Mainz, Germany. julia.schumacher@uni-mainz.de.ORCID 0000-0002-4536-0670
Holger HerlynInstitute of Organismic and Molecular Evolution, Anthropology, Johannes Gutenberg University, Mainz, Germany. herlyn@uni-mainz.de.
Johannes Gutenberg University Mainz · DE

Funding

Deutsche Forschungsgemeinschaft HE 3487/3-1
6 · The paper itself

Abstract

backgroundProtein-coding genes expressed in sperm evolve at different rates. To gain deeper insight into the factors underlying this heterogeneity we examined the relative importance of a diverse set of previously described rate correlates in determining the evolution of murine sperm proteins.

resultsUsing partial rank correlations we detected several major rate indicators: Phyletic gene age, numbers of protein-protein interactions, and survival essentiality emerged as particularly important rate correlates in murine sperm proteins. Tissue specificity, numbers of paralogs, and untranslated region lengths also correlate significantly with sperm genes' evolutionary rates, albeit to a lesser extent. Multifunctionality, coding sequence or average intron lengths, and mean expression level have insignificant or virtually no independent effects on evolutionary rates in murine sperm genes. Gene ontology enrichment analyses of three equally sized murine sperm protein groups classified based on their evolutionary rates indicate strongest sperm-specific functional specialization in the most quickly evolving gene class.

conclusionsWe propose a model according to which slowly evolving murine sperm proteins tend to be constrained by factors such as survival essentiality, network connectivity, and/or broad expression. In contrast, evolutionary change may arise especially in less constrained sperm proteins, which might, moreover, be prone to specialize to reproduction-related functions. Our results should be taken into account in future studies on rate variations of reproductive genes.

Indexed as

Evolution, MolecularAnimalsGene Expression RegulationGene OntologyGenetic PleiotropyIntronsMaleMiceMolecular Sequence AnnotationOpen Reading FramesOrgan SpecificityPhylogenyProteomeSpermatozoaStatistics, NonparametricUntranslated RegionsProteomeUntranslated RegionsdN/dSGene ageGene compactnessMultifunctionalityParalogsProtein essentialityProtein evolutionProtein-protein interactionsSperm proteinsTissue specificity

Identifiers

PMID29580206
PMCPMC5870804
OpenAlexW2803381566

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.