Evidence map›Paper›PMID 29579047›Full record

ArticlePloS one2018

Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases.

Arturo Medrano-Soto, Gabriel Moreno-Hagelsieb, Daniel McLaughlin, Zachary S Ye, Kevin J Hendargo, Milton H Saier

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Review
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  12. The structure of theProceedings of the National Academy of Sciences of the United States of America · 2024
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  13. Article
  14. Phenotypic and Genomic Difference among FourJournal of fungi (Basel, Switzerland) · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Evolution of osmosensing OSCA1 CaThe plant genome · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Arturo Medrano-SotoDepartment of Molecular Biology, University of California at San Diego, La Jolla, California, United States of America.
Gabriel Moreno-HagelsiebDepartment of Biology, Wilfrid Laurier University, Waterloo, Ontario, Canada.
Daniel McLaughlinDepartment of Molecular Biology, University of California at San Diego, La Jolla, California, United States of America.
Zachary S YeDepartment of Molecular Biology, University of California at San Diego, La Jolla, California, United States of America.
Kevin J HendargoDepartment of Molecular Biology, University of California at San Diego, La Jolla, California, United States of America.
Milton H SaierDepartment of Molecular Biology, University of California at San Diego, La Jolla, California, United States of America.ORCID 0000-0001-5530-0017

Funding

The Transporter Classification Database (TCDB)R01GM077402 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAIER, MILTON H. · 2006 to 2021
$4.7M
NIGMS NIH HHS R01 GM077402NIH HHS GM077402
6 · The paper itself

Abstract

Our laboratory has developed bioinformatic strategies for identifying distant phylogenetic relationships and characterizing families and superfamilies of transport proteins. Results using these tools suggest that the Anoctamin Superfamily of cation and anion channels, as well as lipid scramblases, includes three functionally characterized families: the Anoctamin (ANO), Transmembrane Channel (TMC) and Ca2+-permeable Stress-gated Cation Channel (CSC) families; as well as four families of functionally uncharacterized proteins, which we refer to as the Anoctamin-like (ANO-L), Transmembrane Channel-like (TMC-L), and CSC-like (CSC-L1 and CSC-L2) families. We have constructed protein clusters and trees showing the relative relationships among the seven families. Topological analyses suggest that the members of these families have essentially the same topologies. Comparative examination of these homologous families provides insight into possible mechanisms of action, indicates the currently recognized organismal distributions of these proteins, and suggests drug design potential for the disease-related channel proteins.

Indexed as

AnoctaminsMultigene FamilyPhylogenySequence Analysis, ProteinComputational BiologyHumansAnoctamins

Identifiers

PMID29579047
PMCPMC5868767

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.