Evidence map›Paper›PMID 29575713›Full record

ArticleCancer medicine2018

Functional transcriptomic annotation and protein-protein interaction analysis identify EZH2 and UBE2C as key upregulated proteins in ovarian cancer.

Sandra Martínez-Canales, Miguel López de Rodas, Miriam Nuncia-Cantarero, Raquel Páez, Eitan Amir, Balázs Győrffy, Atanasio Pandiella, Eva María Galán-Moya, Alberto Ocaña

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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  8. What is new about ovarian malignancies?Contemporary oncology (Poznan, Poland) · 2021
    Review
  9. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Sandra Martínez-CanalesTranslational Research Unit and Translational Oncology Laboratory, Albacete University Hospital and Centro Regional de Investigaciones Biomedicas, Castilla-La Mancha University (CRIB-UCLM), Albacete, Spain.
Miguel López de RodasTranslational Research Unit and Translational Oncology Laboratory, Albacete University Hospital and Centro Regional de Investigaciones Biomedicas, Castilla-La Mancha University (CRIB-UCLM), Albacete, Spain.
Miriam Nuncia-CantareroTranslational Research Unit and Translational Oncology Laboratory, Albacete University Hospital and Centro Regional de Investigaciones Biomedicas, Castilla-La Mancha University (CRIB-UCLM), Albacete, Spain.
Raquel PáezTranslational Research Unit and Translational Oncology Laboratory, Albacete University Hospital and Centro Regional de Investigaciones Biomedicas, Castilla-La Mancha University (CRIB-UCLM), Albacete, Spain.
Eitan AmirDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada.
Balázs GyőrffySemmelweis University 2nd Department of Pediatrics, Budapest, Hungary.
Atanasio PandiellaCancer Research Center and CIBERONC, CSIC, Salamanca, Spain.
Eva María Galán-MoyaTranslational Research Unit and Translational Oncology Laboratory, Albacete University Hospital and Centro Regional de Investigaciones Biomedicas, Castilla-La Mancha University (CRIB-UCLM), Albacete, Spain.ORCID 0000-0001-5758-7592
Alberto OcañaTranslational Research Unit and Translational Oncology Laboratory, Albacete University Hospital and Centro Regional de Investigaciones Biomedicas, Castilla-La Mancha University (CRIB-UCLM), Albacete, Spain.
Hospital General Universitario de Albacete · ESCentro de Investigación del Cáncer · ESSemmelweis University · HUUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although early stage ovarian cancer is in most cases a curable disease, some patients relapse even with appropriate adjuvant treatment. Therefore, the identification of patient and tumor characteristics to better stratify risk and guide rational drug development is desirable. Using transcriptomic functional annotation followed by protein-protein interacting (PPI) network analyses, we identified functions that were upregulated and associated with detrimental outcome in patients with early stage ovarian cancer. Some of the identified functions included cell cycle, cell division, signal transduction/protein modification, cellular response to extracellular stimuli or transcription regulation, among others. Genes within these functions included AURKA, AURKB, CDK1, BIRC5, or CHEK1 among others. Of note, the histone-lysine N-methyltransferase (EZH2) and the ubiquitin-conjugating enzyme E2C (UBE2C) genes were found to be upregulated and amplified in 10% and 6% of tumors, respectively. Of note, EZH2 and UBE2C were identified as principal interacting proteins of druggable networks. In conclusion, we describe a set of genes overexpressed in ovarian cancer with potential for therapeutic intervention including EZH2 and UBE2C.

Indexed as

Up-RegulationBiomarkers, TumorEnhancer of Zeste Homolog 2 ProteinFemaleGene AmplificationGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansMolecular Sequence AnnotationNeoplasm StagingOvarian NeoplasmsPrognosisProtein Interaction MappingProtein Interaction MapsSurvival AnalysisBiomarkers, TumorEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanUBE2C protein, humanUbiquitin-Conjugating EnzymesClinical outcomedruggable proteinsEZH2Ovarian cancerprotein-protein interactionUBE2C

Identifiers

PMID29575713
PMCPMC5943485
OpenAlexW2794049800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.