Evidence map›Paper›PMID 29575628›Full record

ArticleAmerican journal of medical genetics. Part A2018

Congenital sodium diarrhea and chorioretinal coloboma with optic disc coloboma in a patient with biallelic SPINT2 mutations, including p.(Tyr163Cys).

Kristin E Hirabayashi, Anthony T Moore, Bryce A Mendelsohn, Ryan J Taft, Aditi Chawla, Denise Perry, Duncan Henry, Anne Slavotinek

Abstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kristin E HirabayashiDepartment of Ophthalmology, University of California, San Francisco, San Francisco, California.ORCID 0000-0002-6518-3640
Anthony T MooreDepartment of Ophthalmology, University of California, San Francisco, San Francisco, California.
Bryce A MendelsohnDivision of Genetics, Department of Pediatrics, University of California, San Francisco, San Francisco, California.
Ryan J TaftClinical Genomics Research, Illumina Inc., San Diego, California.
Aditi ChawlaClinical Genomics Research, Illumina Inc., San Diego, California.
Denise PerryClinical Genomics Research, Illumina Inc., San Diego, California.
Duncan HenryDivision of Critical Care, Department of Pediatrics, University of California, San Francisco, San Francisco, California.
Anne SlavotinekDivision of Genetics, Department of Pediatrics, University of California, San Francisco, San Francisco, California.
University of California, San Francisco · USIllumina (United States) · US

Funding

Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAKKARAJU, APARNA · 1985 to 2024
$16.8M
NEI NIH HHS P30 EY002162
6 · The paper itself

Abstract

Congenital sodium diarrhea is a rare and life-threatening disorder characterized by a severe, secretory diarrhea containing high concentrations of sodium, leading to hyponatremia and metabolic acidosis. It may occur in isolation or in association with systemic features such as facial dysmorphism, choanal atresia, imperforate anus, and corneal erosions. Mutations in the serine protease inhibitor, Kunitz-Type 2 (SPINT2) gene have been associated with congenital sodium diarrhea and additional syndromic features. We present a child with congenital sodium diarrhea, cleft lip and palate, corneal erosions, optic nerve coloboma, and intermittent exotropia who was found to have biallelic mutations in SPINT2. One mutation, c.488A > G, predicting p.(Tyr163Cys), has been previously associated with a syndromic form of congenital sodium diarrhea. The other mutation, c.166_167dupTA, predicting p.(Asn57Thrfs*24) has not previously been reported and is likely a novel pathogenic variant for this disorder. We found only one other report of an optic nerve coloboma associated with SPINT2 mutations and this occurred in a patient with congenital tufting enteropathy. Our patient confirms an association of ocular coloboma with presumed loss of SPINT2 function.

Indexed as

AllelesMutationAmino Acid SubstitutionColobomaDiarrheaDNA Mutational AnalysisFaciesGenetic Association StudiesHumansInfantMaleMembrane GlycoproteinsOphthalmoscopesOptic NervePhenotypeWhole Genome SequencingMembrane GlycoproteinsSPINT2 protein, humancolobomacongenital sodium diarrheacongenital tufting enteropathycorneal erosionseye findings with SPINT2keratitisocular findings with SPINT2SPINT2

Identifiers

PMID29575628
PMCPMC5875720
OpenAlexW2796199956

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.