Evidence map›Paper›PMID 29574557›Full record

ArticlePlant molecular biology2018

miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.

Hideki Takanashi, Hikari Sumiyoshi, Mirai Mogi, Yoshikazu Hayashi, Takayuki Ohnishi, Nobuhiro Tsutsumi

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
12.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. TheForestry research · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. The NGATHA-like GenesInternational journal of molecular sciences · 2022
    Article
  8. Review
  9. Meristem Initiation andFrontiers in plant science · 2022
    Review
  10. Review
  11. Article
  12. Article
  13. Frontiers in plant science · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hideki TakanashiGraduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan.ORCID http://orcid.org/0000-0003-2251-8508
Hikari SumiyoshiGraduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan.
Mirai MogiGraduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan.
Yoshikazu HayashiGraduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan.
Takayuki OhnishiGraduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan.
Nobuhiro TsutsumiGraduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan. atsutsu@mail.ecc.u-tokyo.ac.jp.
The University of Tokyo · JPUtsunomiya University · JP

Funding

Ministry of Education, Culture, Sports, Science, and Technology of Japan 18075005Ministry of Education, Culture, Sports, Science, and Technology of Japan 26660004
6 · The paper itself

Abstract

key messagemiR171a controls HAM1 functions within the protodermal cells of the embryo, and these controls are essential for normal embryogenesis in Arabidopsis. Arabidopsis thaliana miR171a is known to bind to and cleave mRNAs of three HAIRY MERISTEM (HAM) genes that encode members of the GRAS family transcriptional regulators. The molecular functions of the HAM genes are still being elucidated in Arabidopsis. However, detailed expression patterns of miR171a and the effects of the failure of miR171a to suppress HAM genes were unknown till now. Here, we show the detailed expression patterns of miR171a and HAM1 using green fluorescent protein and confocal scanning microscopy. Our observations revealed that miR171a was expressed in the surface cell layer of the embryo and shoot apical meristem, and it controlled HAM1 functions. To determine the impact of the failure of miR171a to suppress of HAM1, we introduced seven synonymous mutations into the miR171a target site of the HAM1 gene (modified HAM1, mHAM1) and generated transgenic plants that had mHAM1 driven by HAM1 native promoter. The mHAM1 transgenic plants showed organogenic defects. These results indicate that the control of HAM1 functions at the single-cell-layer level by miR171a is essential for proper organ formation in Arabidopsis.

Indexed as

Gene Expression Regulation, DevelopmentalGene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBase SequenceBinding SitesMeristemMicroRNAsMutationPlants, Genetically ModifiedPlant ShootsSeedsSequence Homology, Nucleic AcidArabidopsis ProteinsLOM1 protein, ArabidopsisMicroRNAsMIRN171 microRNA, ArabidopsisEmbryogenesisHAM1/SCL27miR171aPost-transcriptional regulation

Identifiers

PMID29574557
OpenAlexW2789931160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.