ArticleInternational journal of food microbiology2018
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak.
Article in International journal of food microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 1 of them a synthesis that pooled it.
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Who cites it
106 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Maast: genotyping thousands of microbial strains efficiently.Genome biology · 2023Pooled it
- A Simplified Guide to Whole-Genome Sequence Analysis of Salmonella on the Command Line.Methods in molecular biology (Clifton, N.J.) · 2027Article
- Core genome and whole genome multi-locus sequence typing ofMicrobiology spectrum · 2026Article
- Genomic Insights into the Population Structure and Antimicrobial Resistance of the Most Prevalent Human-Associated Non-TyphoidalMicroorganisms · 2026Article
- Targeted amplicon sequencing for enhanced detection of spiked Shiga toxin-producingMicrobiology spectrum · 2026Article
- Prevalence, Genomic Characterization, and Transmission Patterns ofMicroorganisms · 2026Article
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- Genotypic and Phenotypic Characterization ofMicroorganisms · 2026Article
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- Genomic characterization of antimicrobial resistance, virulence, and transmission of non-typhoidalFrontiers in microbiology · 2026Article
- Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation ofJournal of clinical microbiology · 2025Article
- Validation of Core and Whole-Genome Multi-Locus Sequence Typing Schemes for Shiga-Toxin-ProducingMicroorganisms · 2025Article
- Genomic diversity and tracing ofMicrobial genomics · 2025Article
- A core genome MLST scheme for Borrelia burgdorferi sensu lato improves insights into the evolutionary history of the species complex.Cell reports methods · 2025Article
- PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking.GigaScience · 2025Article
- Implementing whole genome sequencing for foodborne pathogen surveillance: insights and recommendations based on expert experiences.Frontiers in microbiology · 2025Article
- Phenotypic and WGS-derived antibiotic resistance patterns ofFrontiers in microbiology · 2025Article
- Effects of Cross-Resistance ofIndian journal of microbiology · 2024Article
- Genomic characterization of a clonal emergentApplied and environmental microbiology · 2024Article
- From acute to persistent infection: revealing phylogenomic variations in Salmonella Agona.PLoS pathogens · 2024Article
46 more citing papers are in PubMed but not listed here.
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6 authors.
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Abstract
Multi-country outbreaks of foodborne bacterial disease present challenges in their detection, tracking, and notification. As food is increasingly distributed across borders, such outbreaks are becoming more common. This increases the need for high-resolution, accessible, and replicable isolate typing schemes. Here we evaluate a core genome multilocus typing (cgMLST) scheme for the high-resolution reproducible typing of Salmonella enterica (S. enterica) isolates, by its application to a large European outbreak of S. enterica serovar Enteritidis. This outbreak had been extensively characterised using single nucleotide polymorphism (SNP)-based approaches. The cgMLST analysis was congruent with the original SNP-based analysis, the epidemiological data, and whole genome MLST (wgMLST) analysis. Combination of the cgMLST and epidemiological data confirmed that the genetic diversity among the isolates predated the outbreak, and was likely present at the infection source. There was consequently no link between country of isolation and genetic diversity, but the cgMLST clusters were congruent with date of isolation. Furthermore, comparison with publicly available Enteritidis isolate data demonstrated that the cgMLST scheme presented is highly scalable, enabling outbreaks to be contextualised within the Salmonella genus. The cgMLST scheme is therefore shown to be a standardised and scalable typing method, which allows Salmonella outbreaks to be analysed and compared across laboratories and jurisdictions.
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