Evidence map›Paper›PMID 29573357›Full record

ArticleJournal of medical virology2018

Rotavirus surveillance in Pakistan during 2015-2016 reveals high prevalence of G12P[6].

Massab Umair, Muhammad Salman, Muhammad Masroor Alam, Muhammad S Rana, Syed S Z Zaidi, Michael D Bowen, Uzma B Aamir, Bilal H Abbasi

Open access · greenAbstract read
In one paragraph

Article in Journal of medical virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Massab UmairDepartment of Virology, National Institute of Health, Chak Shahzad, Islamabad, Pakistan.ORCID 0000-0003-4540-8467
Muhammad SalmanDepartment of Virology, National Institute of Health, Chak Shahzad, Islamabad, Pakistan.
Muhammad Masroor AlamDepartment of Virology, National Institute of Health, Chak Shahzad, Islamabad, Pakistan.
Muhammad S RanaDepartment of Virology, National Institute of Health, Chak Shahzad, Islamabad, Pakistan.
Syed S Z ZaidiDepartment of Virology, National Institute of Health, Chak Shahzad, Islamabad, Pakistan.
Michael D BowenDivision of Viral Diseases, Gastroenteritis and Respiratory Viruses Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Uzma B AamirDepartment of Virology, National Institute of Health, Chak Shahzad, Islamabad, Pakistan.
Bilal H AbbasiDepartment of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan.
National Institute of Health · PKQuaid-i-Azam University · PKCenters for Disease Control and Prevention · US

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

The G12 rotavirus genotype has emerged globally since their first detection in 1987 from the Philippines; however it remains a rare cause of gastroenteritis in Pakistan. Rotavirus surveillance conducted during 2015-2016, assessed 3446 children <5 years hospitalized for gastroenteritis and found 802 (23.2%) positive on ELISA. Genotyping of a subset of positive samples (n = 319) revealed G12P[6] (11.28%) as the third most common G/P combination following G3P[8] (28.5%) and G1P[8] (12.5%); G2P[4] (10.65%) and G3P[6] (8.15%) were other frequently detected strains. Phylogenetic analysis of G12 strains from Pakistan revealed high genetic similarity to G12 strains from Italy, Thailand, Korea, and Great Britain as well as local strains within G12 lineage III. In conclusion, G12P[6] was a major contributor of RVA gastroenteritis in Pakistani children. Robust surveillance after the introduction of rotavirus vaccines will help determine the evolution of G12 and other circulating genotypes in the country.

Indexed as

Epidemiological MonitoringGenotypeChild, PreschoolFemaleHumansInfantInfant, NewbornMalePakistanPrevalenceRotavirusRotavirus InfectionsepidemiologyG12Pakistanrotavirus

Identifiers

PMID29573357
PMCPMC12001283
OpenAlexW2805309416

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.