Evidence map›Paper›PMID 29572459›Full record

ArticleScientific reports2018

Untargeted metabolomics reveals a new mode of action of pretomanid (PA-824).

Rafael Baptista, David M Fazakerley, Manfred Beckmann, Les Baillie, Luis A J Mur

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 104 citations in OpenAlex.

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  13. Sample Preparation in Microbial Metabolomics: Advances and Challenges.Advances in experimental medicine and biology · 2023
    Article
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  17. Metabotyping the Welsh population of badgers based on thoracic fluid.Metabolomics : Official journal of the Metabolomic Society · 2022
    Article
  18. Article
  19. Integrating in vitro metabolomics with a 96-well high-throughput screening platform.Metabolomics : Official journal of the Metabolomic Society · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Rafael BaptistaInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Penglais Campus, Aberystwyth, Wales, SY23 2DA, UK.ORCID 0000-0002-7155-0435
David M FazakerleyInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Penglais Campus, Aberystwyth, Wales, SY23 2DA, UK.
Manfred BeckmannInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Penglais Campus, Aberystwyth, Wales, SY23 2DA, UK.
Les BaillieSchool of Pharmacy and Pharmaceutical Sciences, Cardiff University, Redwood Building, Cardiff, Wales, CF10 3NB, UK.
Luis A J MurInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Penglais Campus, Aberystwyth, Wales, SY23 2DA, UK. lum@aber.ac.uk.ORCID 0000-0002-0961-9817
Aberystwyth University · GBCardiff University · GB

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

Pretomanid is a promising anti-tubercular drug currently at clinical phase III, but its mechanisms of action are currently unclear. This study aimed to: (i) reveal the metabolome of Mycobacterium smegmatis under pretomanid treatment; (ii) compare major sources of metabolite variation in bacteria treated with pretomanid treatment and other antibiotics; and (iii) to target metabolites responsible for the killing activity of pretomanid in mycobacteria. Untargeted high-resolution metabolite profiling was carried out using flow infusion electrospray ion high resolution mass spectrometry (FIE-HRMS) to identify and quantify metabolites. The identification of key metabolites was independently confirmed by gas-chromatography time-of flight mass spectrometry (GC-tofMS) in comparison to standards. Pretomanid treatments generated a unique distinctive metabolite profile when compared to ampicillin, ethambutol, ethionamide, isoniazid, kanamycin, linezolid, rifampicin and streptomycin. Metabolites which differed significantly only with pretomanid treatment were identified and mapped on to bacterial metabolic pathways. This targeted the pentose phosphate pathway with significant accumulation seen with fructose-6-phosphate, ribose-5-phosphate and glyceraldehyde-3-phosphate. These effects were linked to the accumulation of a toxic metabolite methylglyoxal. This compound showed significant antimicrobial activity (MIC 0.65 mM) against M. smegmatis.

Indexed as

Antitubercular AgentsGas Chromatography-Mass SpectrometryHumansMetabolic Networks and PathwaysMetabolomeMetabolomicsMycobacterium Infections, NontuberculousMycobacterium smegmatisNitroimidazolesAntitubercular AgentsNitroimidazolespretomanid

Identifiers

PMID29572459
PMCPMC5865180
OpenAlexW2793955729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.