Evidence map›Paper›PMID 29570706›Full record

ArticlePloS one2018

Intra-operative biopsy in chronic sinusitis detects pathogenic Escherichia coli that carry fimG/H, fyuA and agn43 genes coding biofilm formation.

Michał Michalik, Alfred Samet, Andrzej Marszałek, Beata Krawczyk, Roman Kotłowski, Alex Nowicki, Tomasz Anyszek, Stella Nowicki, Józef Kur, Bogdan Nowicki

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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  9. Pathogens (Basel, Switzerland) · 2020
    Article
  10. The efficacy of diluted topical povidone-iodine rinses in the management of recalcitrant chronic rhinosinusitis: a prospective cohort study.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2019
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Michał MichalikMedical Center MML, Warsaw, Poland.
Alfred SametMedical Center MML, Warsaw, Poland.
Andrzej MarszałekMedical Laboratories, SYNEVO, Warszawa, Poland.
Beata KrawczykDepartment of Molecular Biotechnology and Microbiology, Faculty of Chemistry, Gdańsk University of Technology, Gdańsk, Poland.
Roman KotłowskiDepartment of Molecular Biotechnology and Microbiology, Faculty of Chemistry, Gdańsk University of Technology, Gdańsk, Poland.
Alex NowickiNowicki Institute for Women's Health Research (Now I for HeR), 114 Governors Way, Brentwood, TN, United States of America.
Tomasz AnyszekMedical Laboratories, SYNEVO, Warszawa, Poland.
Stella NowickiNowicki Institute for Women's Health Research (Now I for HeR), 114 Governors Way, Brentwood, TN, United States of America.
Józef KurDepartment of Molecular Biotechnology and Microbiology, Faculty of Chemistry, Gdańsk University of Technology, Gdańsk, Poland.
Bogdan NowickiNowicki Institute for Women's Health Research (Now I for HeR), 114 Governors Way, Brentwood, TN, United States of America.ORCID 0000-0002-3814-3985
Gdańsk University of Technology · PLInstitute for Women's Policy Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this study was to investigate whether or not surgical biopsy of sinus tissue in chronic sinusitis, not responsive to treatment, would detect E. coli. We intended to evaluate E. coli virulence genes, therefore dispute the causal role of such an unusual microorganism in chronic sinusitis, as well as consider effective pathogen-targeted therapy. Patients with E. coli isolated by intra-operative puncture biopsy were included in the study. Genetic analysis of E. coli isolates, including phylogenetic grouping and virulence factor characteristics, were done by multiplex PCR. We identified 26 patients with chronic sinusitis, in which 26 E. coli isolates were cultured. The E. coli isolates belonged mainly to pathogenic phylogenetic group B2, and carried multiple virulence genes. Three genes in particular were present in all (100%) of examined isolates, they were (1) marker agn43 gene for forming biofilm, (2) type 1 fimbriae (fimG/H gene) and (3) yersiniabactin receptor (fyuA). Furthermore, a pseudo-phylogenetic tree of virulence genes distribution revealed possible cooperation between agn43, fimG/H, and fyuA in the coding of biofilm formation. Intra-operative-biopsy and culture-based therapy, targeting the isolated E. coli, coincided with long-term resolution of symptoms. This is the first report demonstrating an association between a highly pathogenic E. coli, chronic sinus infection, and resolution of symptoms upon E. coli targeted therapy, a significant finding due to the fact that E. coli has not been considered to be a commensal organism of the oropharynx or sinuses. We postulate that the simultaneous presence of three genes, each coding biofilm formation, may in part account for the chronicity of E. coli sinusitis.

Indexed as

BiofilmsEscherichia coliPhylogenyAdhesins, Escherichia coliAdultBiopsyChronic DiseaseEscherichia coli InfectionsEscherichia coli ProteinsFemaleFimbriae ProteinsHumansMaleMiddle AgedReceptors, Cell SurfaceSinusitisAdhesins, Escherichia coliantigen 43, E coliEscherichia coli ProteinsFimbriae ProteinsFimG protein, E colifimH protein, E coliFyuA protein, E coliReceptors, Cell Surface

Identifiers

PMID29570706
PMCPMC5865710
OpenAlexW2791246296

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.