Evidence map›Paper›PMID 29568401›Full record

ArticleOncotarget2018

A single digital droplet PCR assay to detect multiple

Pieter A Boonstra, Arja Ter Elst, Marco Tibbesma, Lisette J Bosman, Ron Mathijssen, Florence Atrafi, Frits van Coevorden, Neeltje Steeghs, Sheima Farag, Hans Gelderblom and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Pilot Study by Liquid Biopsy in Gastrointestinal Stromal Tumors: Analysis ofInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 1 country.

Pieter A BoonstraUniversity of Groningen, University Medical Center Groningen, Department of Medical Oncology, Groningen 9713 GZ, The Netherlands.
Arja Ter ElstUniversity of Groningen, University Medical Center Groningen, Department of Pathology, Groningen 9713 GZ, The Netherlands.
Marco TibbesmaUniversity of Groningen, University Medical Center Groningen, Department of Medical Oncology, Groningen 9713 GZ, The Netherlands.
Lisette J BosmanUniversity of Groningen, University Medical Center Groningen, Department of Pathology, Groningen 9713 GZ, The Netherlands.
Ron MathijssenDepartment of Medical Oncology, Erasmus University Medical Center Rotterdam, Rotterdam 3015 CE, The Netherlands.
Florence AtrafiDepartment of Medical Oncology, Erasmus University Medical Center Rotterdam, Rotterdam 3015 CE, The Netherlands.
Frits van CoevordenAntoni van Leeuwenhoek, Netherlands Cancer Institute, Department of Surgery, Amsterdam 1066 CX, The Netherlands.
Neeltje SteeghsAntoni van Leeuwenhoek, Netherlands Cancer Institute, Department of Medical Oncology, Amsterdam 1066 CX, The Netherlands.
Sheima FaragAntoni van Leeuwenhoek, Netherlands Cancer Institute, Department of Medical Oncology, Amsterdam 1066 CX, The Netherlands.
Hans GelderblomLeiden University Medical Center, Department of Medical Oncology, Leiden 2300 RC, The Netherlands.
Winette T A van der GraafRadboud University Medical Center, Department of Medical Oncology, Nijmegen 6500 HB, The Netherlands.
Ingrid M E DesarRadboud University Medical Center, Department of Medical Oncology, Nijmegen 6500 HB, The Netherlands.
Jacqueline MaierUniversity of Leipzig, Center for Internal Medicine, Department of Hematology/Oncology, Leipzig 04103, Germany.
Jelle OverboschUniversity of Groningen, University Medical Center Groningen, Department of Radiology, Groningen 9713 GZ, The Netherlands.
Albert J H SuurmeijerUniversity of Groningen, University Medical Center Groningen, Department of Pathology, Groningen 9713 GZ, The Netherlands.
Jourik GietemaUniversity of Groningen, University Medical Center Groningen, Department of Medical Oncology, Groningen 9713 GZ, The Netherlands.
Ed SchuuringUniversity of Groningen, University Medical Center Groningen, Department of Pathology, Groningen 9713 GZ, The Netherlands.
Anna K L ReynersUniversity of Groningen, University Medical Center Groningen, Department of Medical Oncology, Groningen 9713 GZ, The Netherlands.
University Medical Center Groningen · NLThe Netherlands Cancer Institute · NLUniversity of Groningen · NLErasmus MC · NLLeiden University Medical Center · NLRadboud University Medical Center · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGastrointestinal stromal tumors (GISTs) are characterized by oncogenic

methodsA ddPCR assay was designed using two probes that cover both hotspots. Available archival FFPE tumor tissue from 27 consecutive patients with known KIT exon 11 mutations and 9 randomly selected patients without exon 11 mutations were tested. Plasma samples were prospectively collected in a multicenter bio-databank from December 2014. ctDNA was analyzed of 22 patients with an exon 11 mutation and a baseline plasma sample.

resultsThe ddPCR assay detected the exon 11 mutation in 21 of 22 tumors with exon 11 mutations covered by the assay. Mutations in ctDNA were detected at baseline in 13 of 14 metastasized patients, but in only 1 of 8 patients with localized disease. In serial plasma samples from 11 patients with metastasized GIST, a decrease in mutant droplets was detected during treatment. According to RECIST 1.1, 10 patients had radiological treatment response and one patient stable disease.

conclusionA single ddPCR assay for the detection of multiple exon 11 mutations in ctDNA is a feasible, promising tool for monitoring treatment response in patients with metastasized GIST and should be further evaluated in a larger cohort.

Indexed as

cell-free circulating DNAdigital droplet PCRGISTplasmasingle assay

Identifiers

PMID29568401
PMCPMC5862622
OpenAlexW2790115701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.