Evidence map›Paper›PMID 29568061›Full record

ArticleNature communications2018

An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations.

Xiaonan Liu, Kari Salokas, Fitsum Tamene, Yaming Jiu, Rigbe G Weldatsadik, Tiina Öhman, Markku Varjosalo

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 153 papers.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed.

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  15. State-of-the-Art and Future Directions in Structural Proteomics.Molecular & cellular proteomics : MCP · 2025
    Review
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93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaonan LiuInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland.ORCID http://orcid.org/0000-0002-9600-0536
Kari SalokasInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland.ORCID http://orcid.org/0000-0002-4471-6698
Fitsum TameneInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland.
Yaming JiuInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland.ORCID http://orcid.org/0000-0002-8601-8820
Rigbe G WeldatsadikInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland.
Tiina ÖhmanInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland.
Markku VarjosaloInstitute of Biotechnology, University of Helsinki, Helsinki, 00014, Finland. markku.varjosalo@helsinki.fi.ORCID http://orcid.org/0000-0002-1340-9732

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-protein interactions govern almost all cellular functions. These complex networks of stable and transient associations can be mapped by affinity purification mass spectrometry (AP-MS) and complementary proximity-based labeling methods such as BioID. To exploit the advantages of both strategies, we here design and optimize an integrated approach combining AP-MS and BioID in a single construct, which we term MAC-tag. We systematically apply the MAC-tag approach to 18 subcellular and 3 sub-organelle localization markers, generating a molecular context database, which can be used to define a protein's molecular location. In addition, we show that combining the AP-MS and BioID results makes it possible to obtain interaction distances within a protein complex. Taken together, our integrated strategy enables the comprehensive mapping of the physical and functional interactions of proteins, defining their molecular context and improving our understanding of the cellular interactome.

Indexed as

BiotinylationCell LineChromatography, AffinityHigh-Throughput Screening AssaysHumansMass SpectrometryProtein BindingProtein Interaction MappingProteinsProtein TransportProteins

Identifiers

PMID29568061
PMCPMC5864832

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.