Evidence map›Paper›PMID 29567962›Full record

ArticleNature communications2018

Cryo-EM structure of the polycystic kidney disease-like channel PKD2L1.

Qiang Su, Feizhuo Hu, Yuxia Liu, Xiaofei Ge, Changlin Mei, Shengqiang Yu, Aiwen Shen, Qiang Zhou, Chuangye Yan, Jianlin Lei and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
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  6. Review
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  8. Article
  9. Review
  10. Article
  11. Pathogenic variants in the polycystin pore helix cause distinct forms of channel dysfunction.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Contemporary Perspectives on Chronic Renal Disorders.Chronic diseases and translational medicine · 2025
    Review
  14. Article
  15. A synthetic method to assay polycystin channel biophysics.bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Review
  18. Article
  19. Molecular and structural basis of the dual regulation of the polycystin-2 ion channel by small-molecule ligands.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Sample Preparation for Electron Cryo-Microscopy of Macromolecular Machines.Advances in experimental medicine and biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Qiang SuMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China.
Feizhuo HuMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China.
Yuxia LiuSchool of Medicine, Tsinghua University, Beijing, 100084, China.
Xiaofei GeMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China.
Changlin MeiDepartment of Nephrology, Changzheng Hospital, Second Military Medical University, Shanghai, 200433, China.
Shengqiang YuDepartment of Nephrology, Changzheng Hospital, Second Military Medical University, Shanghai, 200433, China.
Aiwen ShenDepartment of Nephrology, Changzheng Hospital, Second Military Medical University, Shanghai, 200433, China.
Qiang ZhouMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China.
Chuangye YanMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China.
Jianlin LeiMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China.ORCID http://orcid.org/0000-0002-9384-8742
Yanqing ZhangMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China. zhangyanqing15@mail.tsinghua.edu.cn.
Xiaodong LiuSchool of Life Sciences, Tsinghua University, Beijing, 100084, China. liu-lab@vip.163.com.
Tingliang WangMinistry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing, 100084, China. wangtingliang@mail.tsinghua.edu.cn.
Beijing Advanced Sciences and Innovation Center · CNSecond Military Medical University · CNCenter for Life Sciences · CNChinese Institute for Brain Research · CNKing Center · USTsinghua University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PKD2L1, also termed TRPP3 from the TRPP subfamily (polycystic TRP channels), is involved in the sour sensation and other pH-dependent processes. PKD2L1 is believed to be a nonselective cation channel that can be regulated by voltage, protons, and calcium. Despite its considerable importance, the molecular mechanisms underlying PKD2L1 regulations are largely unknown. Here, we determine the PKD2L1 atomic structure at 3.38 Å resolution by cryo-electron microscopy, whereby side chains of nearly all residues are assigned. Unlike its ortholog PKD2, the pore helix (PH) and transmembrane segment 6 (S6) of PKD2L1, which are involved in upper and lower-gate opening, adopt an open conformation. Structural comparisons of PKD2L1 with a PKD2-based homologous model indicate that the pore domain dilation is coupled to conformational changes of voltage-sensing domains (VSDs) via a series of π-π interactions, suggesting a potential PKD2L1 gating mechanism.

Indexed as

AnimalsCalcium ChannelsCryoelectron MicroscopyHumansMiceProtein Conformation, alpha-HelicalProtein DomainsReceptors, Cell SurfaceTRPP Cation ChannelsCalcium ChannelsPKD2L1 protein, humanPkd2l1 protein, mouseReceptors, Cell SurfaceTRPP Cation Channels

Identifiers

PMID29567962
PMCPMC5864754
OpenAlexW2792237064

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.