Evidence map›Paper›PMID 29566053›Full record

ArticlePloS one2018

The development of functional mapping by three sex-related loci on the third whorl of different sex types of Carica papaya L.

Chen-Yu Lee, Hui-Jun Lin, Kotapati Kasi Viswanath, Chih-Peng Lin, Bill Chia-Han Chang, Pei-Hsun Chiu, Chan-Tai Chiu, Ren-Huang Wang, Shih-Wen Chin, Fure-Chyi Chen

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Chen-Yu LeeDepartment of Plant Industry, National Pingtung University of Science and Technology, Pingtung, Taiwan.ORCID 0000-0003-2807-176X
Hui-Jun LinDepartment of Plant Industry, National Pingtung University of Science and Technology, Pingtung, Taiwan.
Kotapati Kasi ViswanathDepartment of Plant Industry, National Pingtung University of Science and Technology, Pingtung, Taiwan.
Chih-Peng LinYourgene Bioscience, Shu-Lin District, New Taipei City, Taiwan.
Bill Chia-Han ChangYourgene Bioscience, Shu-Lin District, New Taipei City, Taiwan.
Pei-Hsun ChiuYourgene Bioscience, Shu-Lin District, New Taipei City, Taiwan.
Chan-Tai ChiuPingtung Seed & Seedling Research Center, Taiwan Seed Improvement and Propagation Station, Pingtung, Taiwan.
Ren-Huang WangKaohsiung District Agricultural Research and Extension Station, Council of Agriculture, Pingtung, Taiwan.
Shih-Wen ChinDepartment of Plant Industry, National Pingtung University of Science and Technology, Pingtung, Taiwan.
Fure-Chyi ChenDepartment of Plant Industry, National Pingtung University of Science and Technology, Pingtung, Taiwan.
National Pingtung University of Science and Technology · TWCouncil of Agriculture · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carica papaya L. is an important economic crop worldwide and is used as a model plant for sex-determination research. To study the different flower sex types, we screened sex-related genes using alternative splicing sequences (AS-seqs) from a transcriptome database of the three flower sex types, i.e., males, females, and hermaphrodites, established at 28 days before flowering using 15 bacterial artificial chromosomes (BACs) of C. papaya L. After screening, the cDNA regions of the three sex-related loci, including short vegetative phase-like (CpSVPL), the chromatin assembly factor 1 subunit A-like (CpCAF1AL), and the somatic embryogenesis receptor kinase (CpSERK), which contained eight sex-related single-nucleotide polymorphisms (SNPs) from the different sex types of C. papaya L., were genotyped using high-resolution melting (HRM). The three loci were examined regarding the profiles of the third whorl, as described below. CpSVPL, which had one SNP associated with the three sex genotypes, was highly expressed in the male and female sterile flowers (abnormal hermaphrodite flowers) that lacked the fourth whorl structure. CpCAF1AL, which had three SNPs associated with the male genotype, was highly expressed in male and normal hermaphrodite flowers, and had no AS-seqs, whereas it exhibited low expression and an AS-seqs in intron 11 in abnormal hermaphrodite flowers. Conversely, carpellate flowers (abnormal hermaphrodite flowers) showed low expression of CpSVPL and AS-seqs in introns 5, 6, and 7 of CpSERK, which contained four SNPs associated with the female genotype. Specifically, the CpSERK and CpCAF1AL loci exhibited no AS-seq expression in the third whorl of the male and normal hermaphrodite flowers, respectively, and variance in the AS-seq expression of all other types of flowers. Functional mapping of the third whorl of normal hermaphrodites indicated no AS-seq expression in CpSERK, low CpSVPL expression, and, for CpCAF1AL, high expression and no AS-seq expression on XYh-type chromosomes.

Indexed as

Genetic LociCaricaChromosome MappingChromosomes, PlantFlowersGene Expression Regulation, PlantGenotypeSex ChromosomesSex Determination Processes

Identifiers

PMID29566053
PMCPMC5864051
OpenAlexW2791625079

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.