Evidence map›Paper›PMID 29566047›Full record

ArticlePloS one2018

Analysis of cell surface and intranuclear markers on non-stimulated human PBMC using mass cytometry.

Gaëlle Dzangué-Tchoupou, Aurélien Corneau, Catherine Blanc, Olivier Benveniste, Yves Allenbach

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Gaëlle Dzangué-TchoupouCentre of research in Myology, Sorbonne Universités, UPMC Univ Paris 06, INSERM, UMR 974, Pitié-Salpêtrière University hospital, Paris, France.ORCID 0000-0002-4607-0931
Aurélien CorneauPlateforme de Cytométrie (CyPS), Sorbonne Universités, UPMC Univ Paris 06, INSERM, UMR 1135, Paris, France.
Catherine BlancPlateforme de Cytométrie (CyPS), Sorbonne Universités, UPMC Univ Paris 06, INSERM, UMR 1135, Paris, France.
Olivier BenvenisteCentre of research in Myology, Sorbonne Universités, UPMC Univ Paris 06, INSERM, UMR 974, Pitié-Salpêtrière University hospital, Paris, France.
Yves AllenbachCentre of research in Myology, Sorbonne Universités, UPMC Univ Paris 06, INSERM, UMR 974, Pitié-Salpêtrière University hospital, Paris, France.
Inserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mass cytometry is a powerful tool that allows simultaneous analysis of more than 37 markers at the single cell level. Mass cytometry is of particular interest in the identification of a wide variety of cell phenotypes in autoimmune diseases. Moreover, cells can be labelled with palladium isotopes and pooled before staining (barcoding). Nevertheless, immunologists often face an important problem concerning the choice of markers to be included in a panel. This problem arises due to the incompatibility of different buffers used for the fixation and permeabilization of cells with various cell surface epitopes. In this study, we used a panel of 27 markers (19 surface markers and 8 intranuclear markers) to demonstrate disparities in the detection of cell surface antigens when comparing different buffers to stain unstimulated peripheral blood mononuclear cells. These disparities range from mild differences to very important differences in population frequencies depending on the buffers. Finally, we demonstrate the harmful effects of permeabilization prior to barcoding on the detection of some cell surface antigens. Here, we optimize a protocol that is suitable to use when targeting a large panel including both cell surface and intranuclear markers on unstimulated human peripheral blood mononuclear cells.

Indexed as

Antigens, SurfaceBiomarkersCell MembraneCell Membrane PermeabilityCell NucleusCell SeparationEpitopesFixativesFlow CytometryHumansIsotopesLeukocytes, MononuclearMolecular TypingPalladiumStaining and LabelingTissue FixationAntigens, SurfaceBiomarkersEpitopesFixativesIsotopesPalladium

Identifiers

PMID29566047
PMCPMC5864033
OpenAlexW2789793371

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.