Evidence map›Paper›PMID 29565999›Full record

ArticlePloS one2018

High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China.

Yu-Jie Wei, Yun Wu, Yin-Zhuo Yan, Wan Zou, Jie Xue, Wen-Rui Ma, Wei Wang, Ge Tian, Li-Ye Wang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 132 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yu-Jie WeiCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.ORCID 0000-0003-3924-7214
Yun WuCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.
Yin-Zhuo YanChina National Research Institute of Food & Fermentation Industries, Beijing, China.
Wan ZouCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.
Jie XueChina National Research Institute of Food & Fermentation Industries, Beijing, China.
Wen-Rui MaCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.
Wei WangCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.
Ge TianCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.
Li-Ye WangCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.
Xinjiang Agricultural University · CNChina National Research Institute of Food and Fermentation · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study Illumina MiSeq was performed to investigate microbial diversity in soil, leaves, grape, grape juice and wine. A total of 1,043,102 fungal Internal Transcribed Spacer (ITS) reads and 2,422,188 high quality bacterial 16S rDNA sequences were used for taxonomic classification, revealed five fungal and eight bacterial phyla. At the genus level, the dominant fungi were Ascomycota, Sordariales, Tetracladium and Geomyces in soil, Aureobasidium and Pleosporaceae in grapes leaves, Aureobasidium in grape and grape juice. The dominant bacteria were Kaistobacter, Arthrobacter, Skermanella and Sphingomonas in soil, Pseudomonas, Acinetobacter and Kaistobacter in grape and grapes leaves, and Oenococcus in grape juice and wine. Principal coordinate analysis showed structural separation between the composition of fungi and bacteria in all samples. This is the first study to understand microbiome population in soil, grape, grapes leaves, grape juice and wine in Xinjiang through High-throughput Sequencing and identify microorganisms like Saccharomyces cerevisiae and Oenococcus spp. that may contribute to the quality and flavor of wine.

Indexed as

Food MicrobiologyHigh-Throughput Nucleotide SequencingSoil MicrobiologyChinaFruit and Vegetable JuicesMicrobial ConsortiaVitisWine

Identifiers

PMID29565999
PMCPMC5863948
OpenAlexW2790418340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.