Evidence map›Paper›PMID 29565971›Full record

ArticlePLoS genetics2018

Sequential induction of three recombination directionality factors directs assembly of tripartite integrative and conjugative elements.

Timothy L Haskett, Jason J Terpolilli, Vinoy K Ramachandran, Callum J Verdonk, Phillip S Poole, Graham W O'Hara, Joshua P Ramsay

Abstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Competition in thePlant and soil · 2023
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  9. Article
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  11. Article
  12. Evolution of diverse effective NApplied and environmental microbiology · 2021
    Article
  13. Review
  14. Review
  15. Review
  16. Giant Transposons in Eukaryotes: Is Bigger Better?Genome biology and evolution · 2019
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Timothy L HaskettCentre for Rhizobium Studies, School of Veterinary and Life Sciences, Murdoch University, Perth, WA, Australia.ORCID 0000-0003-4675-6009
Jason J TerpolilliCentre for Rhizobium Studies, School of Veterinary and Life Sciences, Murdoch University, Perth, WA, Australia.ORCID 0000-0003-4306-3346
Vinoy K RamachandranDepartment of Plant Sciences, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-8792-3582
Callum J VerdonkSchool of Pharmacy and Biomedical Sciences and the Curtin Health Innovation Research Institute, Curtin University, Perth, WA, Australia.
Phillip S PooleDepartment of Plant Sciences, University of Oxford, Oxford, United Kingdom.
Graham W O'HaraCentre for Rhizobium Studies, School of Veterinary and Life Sciences, Murdoch University, Perth, WA, Australia.
Joshua P RamsaySchool of Pharmacy and Biomedical Sciences and the Curtin Health Innovation Research Institute, Curtin University, Perth, WA, Australia.ORCID 0000-0002-1301-7077

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tripartite integrative and conjugative elements (ICE3) are a novel form of ICE that exist as three separate DNA regions integrated within the genomes of Mesorhizobium spp. Prior to conjugative transfer the three ICE3 regions of M. ciceri WSM1271 ICEMcSym1271 combine and excise to form a single circular element. This assembly requires three coordinated recombination events involving three site-specific recombinases IntS, IntG and IntM. Here, we demonstrate that three excisionases-or recombination directionality factors-RdfS, RdfG and RdfM are required for ICE3 excision. Transcriptome sequencing revealed that expression of ICE3 transfer and conjugation genes was induced by quorum sensing. Quorum sensing activated expression of rdfS, and in turn RdfS stimulated transcription of both rdfG and rdfM. Therefore, RdfS acts as a "master controller" of ICE3 assembly and excision. The dependence of all three excisive reactions on RdfS ensures that ICE3 excision occurs via a stepwise sequence of recombination events that avoids splitting the chromosome into a non-viable configuration. These discoveries expose a surprisingly simple control system guiding molecular assembly of these novel and complex mobile genetic elements and highlight the diverse and critical functions of excisionase proteins in control of horizontal gene transfer.

Indexed as

Recombination, GeneticAmino Acid SequenceChromosomes, BacterialDNA NucleotidyltransferasesGenes, BacterialGene Transfer, HorizontalHigh-Throughput Nucleotide SequencingMesorhizobiumQuorum SensingReal-Time Polymerase Chain ReactionRNA, BacterialViral ProteinsDNA NucleotidyltransferasesexcisionaseRNA, BacterialSite-specific recombinaseViral Proteins

Identifiers

PMID29565971
PMCPMC5882170

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.