ArticleBio-protocol2018
Adapting the Smart-seq2 Protocol for Robust Single Worm RNA-seq.
Article in Bio-protocol, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
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Who cites it
20 citing papers in PubMed.
- Engineering the auxin-inducible degron system for tunable in vivo control of organismal physiology.Nature communications · 2025Article
- Behavioral age-detection in individuals reconstructs minute-scale developmental transcriptomics.bioRxiv : the preprint server for biology · 2025Article
- Gene expression variation across genetically identical individuals predicts reproductive traits.eLife · 2025Article
- Time-course swRNA-seq uncovers a hierarchical gene regulatory network in controlling the response-repair-remodeling after wounding.Communications biology · 2024Article
- SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans.Development (Cambridge, England) · 2023Article
- Single-worm long-read sequencing reveals genome diversity in free-living nematodes.Nucleic acids research · 2023Article
- Cosegregation of recombinant chromatids maintains genome-wide heterozygosity in an asexual nematode.Science advances · 2023Article
- Single Nematode Transcriptomic Analysis, Using Long-Read Technology, Reveals Two Novel Virulence Gene Candidates in the Soybean Cyst Nematode,International journal of molecular sciences · 2023Article
- Using single-worm RNA sequencing to study C. elegans responses to pathogen infection.BMC genomics · 2022Article
- Disruption of β-Catenin-Dependent Wnt Signaling in Colon Cancer Cells Remodels the Microenvironment to Promote Tumor Invasion.Molecular cancer research : MCR · 2022Article
- Nuclear receptors NHR-49 and NHR-79 promote peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans.PLoS genetics · 2021Article
- The mode of expression divergence inGenome research · 2021Article
- Enabling high-throughput single-animal gene-expression studies with molecular and micro-scale technologies.Lab on a chip · 2020Article
- Alignment and mapping methodology influence transcript abundance estimation.Genome biology · 2020Article
- Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application.Journal of hematology & oncology · 2020Review
- High-Throughput Quantitative RT-PCR in Single and Bulk C. elegans Samples Using Nanofluidic Technology.Journal of visualized experiments : JoVE · 2020Article
- Hybrid Assembly of the Genome of the Entomopathogenic NematodeG3 (Bethesda, Md.) · 2019Article
- A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema.PLoS pathogens · 2019Article
- Touch-stimulation increases host-seeking behavior inJournal of nematology · 2019Article
- Differential expression profiles of long non‑coding RNAs during the mouse pronuclear stage under normal gravity and simulated microgravity.Molecular medicine reports · 2019Article
Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
Most nematodes are small worms that lack enough RNA for regular RNA-seq protocols without pooling hundred to thousand of individuals. We have adapted the Smart-seq2 protocol in order to sequence the transcriptome of an individual worm. While developed for individual
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Registered trials
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