Evidence map›Paper›PMID 29563516›Full record

ArticleNature communications2018

A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61.

Daniel P Depledge, Werner J D Ouwendijk, Tomohiko Sadaoka, Shirley E Braspenning, Yasuko Mori, Randall J Cohrs, Georges M G M Verjans, Judith Breuer

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it, 125 citations in OpenAlex.

  1. Pooled it
  2. Varicella zoster virus infection.Nature reviews. Disease primers · 2026
    Review
  3. Article
  4. Varicella zoster virus and the central nervous system.Nature reviews. Microbiology · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Global cis-regulatory landscape of double-stranded DNA viruses.bioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 5 countries.

Daniel P DepledgeDivision of Infection and Immunity, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0002-4292-0599
Werner J D OuwendijkDepartment of Viroscience, Erasmus Medical Centre, 3015 CN, Rotterdam, The Netherlands.
Tomohiko SadaokaDivision of Clinical Virology, Center for Infectious Diseases, Kobe University Graduate School of Medicine, 7-5-1 Kusunoki-cho, Chuo-ku, Kobe, 650-0017, Japan.ORCID http://orcid.org/0000-0001-7951-6904
Shirley E BraspenningDepartment of Viroscience, Erasmus Medical Centre, 3015 CN, Rotterdam, The Netherlands.
Yasuko MoriDivision of Clinical Virology, Center for Infectious Diseases, Kobe University Graduate School of Medicine, 7-5-1 Kusunoki-cho, Chuo-ku, Kobe, 650-0017, Japan.
Randall J CohrsDepartment of Neurology, University of Colorado School of Medicine, Aurora, CO, 12700, USA.
Georges M G M VerjansDepartment of Viroscience, Erasmus Medical Centre, 3015 CN, Rotterdam, The Netherlands. g.verjans@erasmusmc.nl.
Judith BreuerDivision of Infection and Immunity, University College London, London, WC1E 6BT, UK. j.breuer@ucl.ac.uk.ORCID http://orcid.org/0000-0001-8246-0534
Erasmus University Rotterdam · NLKobe University · JPUniversity College London · GBUniversity of Colorado Denver · USUniversity of Veterinary Medicine Hannover, Foundation · DE

Funding

VARICELLA ZOSTER VIRUS VASCULOPATHY: CHANGING CLINICAL PRACTICEP01AG032958 · NIA · UNIVERSITY OF COLORADO DENVER · PI COHRS, RANDALL J. · 2009 to 2023
$30.3M
Neurobiology of Varicella Zoster VirusR01NS093716 · NINDS · UNIVERSITY OF COLORADO DENVER · PI COHRS, RANDALL J. · 2015 to 2019
$2.2M
Prevention of VZV ReactivationR01NS082228 · NINDS · UNIVERSITY OF COLORADO DENVER · PI COHRS, RANDALL J. · 2013 to 2017
$1.7M
Medical Research Council G0700814Medical Research Council G0900950NIA NIH HHS P01 AG032958NINDS NIH HHS R01 NS082228NINDS NIH HHS R01 NS093716
6 · The paper itself

Abstract

Varicella-zoster virus (VZV), an alphaherpesvirus, establishes lifelong latent infection in the neurons of >90% humans worldwide, reactivating in one-third to cause shingles, debilitating pain and stroke. How VZV maintains latency remains unclear. Here, using ultra-deep virus-enriched RNA sequencing of latently infected human trigeminal ganglia (TG), we demonstrate the consistent expression of a spliced VZV mRNA, antisense to VZV open reading frame 61 (ORF61). The spliced VZV latency-associated transcript (VLT) is expressed in human TG neurons and encodes a protein with late kinetics in productively infected cells in vitro and in shingles skin lesions. Whereas multiple alternatively spliced VLT isoforms (VLT

Indexed as

Virus LatencyAnimalsChromosome MappingDNA, ViralGenome, ViralHerpesvirus 3, HumanHerpes ZosterHigh-Throughput Nucleotide SequencingHumansNeuronsRNA, AntisenseRNA, MessengerRNA SplicingRNA, ViralSkinTrigeminal GanglionDNA, Viralprotein 61, Varicella-zoster virusRNA, AntisenseRNA, MessengerRNA, ViralViral Proteins

Identifiers

PMID29563516
PMCPMC5862956
OpenAlexW2793932099

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.