Evidence map›Paper›PMID 29563293›Full record

ArticleJournal of virology2018

Characterization of H5N1 Influenza Virus Quasispecies with Adaptive Hemagglutinin Mutations from Single-Virus Infections of Human Airway Cells.

Yohei Watanabe, Yasuha Arai, Norihito Kawashita, Madiha S Ibrahim, Emad M Elgendy, Tomo Daidoji, Junichi Kajikawa, Hiroaki Hiramatsu, Nongluk Sriwilaijaroen, Takao Ono and 6 more

Abstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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  13. Impact of RNA Virus Evolution on Quasispecies Formation and Virulence.International journal of molecular sciences · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yohei WatanabeDepartment of Infectious Diseases, Kyoto Prefectural School of Medicine, Kyoto, Japan nabe@koto.kpu-m.ac.jp.
Yasuha AraiDepartment of Infectious Diseases, Kyoto Prefectural School of Medicine, Kyoto, Japan.
Norihito KawashitaFaculty of Science and Engineering, Kindai University, Osaka, Japan.
Madiha S IbrahimDepartment of Microbiology and Immunology, Faculty of Veterinary Medicine, Damanhour University, Damanhour, Egypt.
Emad M ElgendyDepartment of Microbiology and Immunology, Faculty of Veterinary Medicine, Damanhour University, Damanhour, Egypt.
Tomo DaidojiDepartment of Infectious Diseases, Kyoto Prefectural School of Medicine, Kyoto, Japan.
Junichi KajikawaDepartment of Infectious Diseases, Kyoto Prefectural School of Medicine, Kyoto, Japan.
Hiroaki HiramatsuCollege of Life and Health Sciences, Chubu University, Aichi, Japan.
Nongluk SriwilaijaroenCollege of Life and Health Sciences, Chubu University, Aichi, Japan.
Takao OnoThe Institute of Scientific and Industrial Research, Osaka University, Osaka, Japan.
Tatsuya TakagiGraduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan.
Kazuo TakahashiDepartment of Clinical Laboratory, International University of Health and Welfare Hospital, Tochigi, Japan.
Tatsuo ShiodaDepartment of Viral infections, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Kazuhiko MatsumotoThe Institute of Scientific and Industrial Research, Osaka University, Osaka, Japan.
Yasuo SuzukiCollege of Life and Health Sciences, Chubu University, Aichi, Japan.
Takaaki NakayaDepartment of Infectious Diseases, Kyoto Prefectural School of Medicine, Kyoto, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transmission of avian influenza (AI) viruses to mammals involves phylogenetic bottlenecks that select small numbers of variants for transmission to new host species. However, little is known about the AI virus quasispecies diversity that produces variants for virus adaptation to humans. Here, we analyzed the hemagglutinin (HA) genetic diversity produced during AI H5N1 single-virus infection of primary human airway cells and characterized the phenotypes of these variants. During single-virus infection, HA variants emerged with increased fitness to infect human cells. These variants generally had decreased HA thermostability, an indicator of decreased transmissibility, that appeared to compensate for their increase in α2,6-linked sialic acid (α2,6 Sia) binding specificity and/or in the membrane fusion pH threshold, each of which is an advantageous mutational change for viral infection of human airway epithelia. An HA variant with increased HA thermostability also emerged but could not outcompete variants with less HA thermostability. These results provided data on HA quasispecies diversity in human airway cells.

Indexed as

AnimalsCell LineChlorocebus aethiopsDogsGenetic VariationHEK293 CellsHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A Virus, H5N1 SubtypeInfluenza, HumanMadin Darby Canine Kidney CellsQuasispeciesReceptors, VirusRespiratory MucosaRespiratory SystemSialic AcidsHemagglutinin Glycoproteins, Influenza VirusReceptors, VirusSialic AcidsH5N1 avian influenza virushemagglutininhuman adaptationhuman airway cellsquasispeciesvariant

Identifiers

PMID29563293
PMCPMC5952156

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.