Evidence map›Paper›PMID 29563289›Full record

Trial reportJournal of virology2018

Deep-Sequencing Analysis of the Dynamics of HIV-1 Quasiespecies in Naive Patients during a Short Exposure to Maraviroc.

Almudena Cascajero, Alberto Rastrojo, Francisco Díez-Fuertes, Beatriz Hernández-Novoa, Begoña Aguado, Santiago Moreno, José Alcami, Mayte Pérez-Olmeda

Registry-linked trialOpen access · bronzeAbstract readRandomized Controlled Trial
In one paragraph

Trial report in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01060618 (Estudio Comparativo de Dos métodos Para Predecir el Uso de Co-receptores Por el Virus de la Inmunodeficiencia 1), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01060618 phase2 / phase3completednot on this map

Estudio Comparativo de Dos métodos Para Predecir el Uso de Co-receptores Por el Virus de la Inmunodeficiencia 1 (HIV-1): el Ensayo fenotípico (Trofile ESTA®) y la Respuesta virológica a Corto Plazo a un Antagonista de CCR5

TypeinterventionalSponsorAsociacion para el Estudio de las Enfermedades InfecciosasRan2009 to 2011Enrolled58ConditionsHIV InfectionsArmsMaraviroc + Trofile ESTA® (diagnose test)
3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Frontiers in cellular and infection microbiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Almudena CascajeroAIDS Immunopathology Unit, Instituto de Salud Carlos III, Centro Nacional de Microbiología, Madrid, Spain.
Alberto RastrojoCentro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid, Madrid, Spain.
Francisco Díez-FuertesAIDS Immunopathology Unit, Instituto de Salud Carlos III, Centro Nacional de Microbiología, Madrid, Spain.
Beatriz Hernández-NovoaServicio de Enfermedades Infecciosas, Hospital Universitario Ramón y Cajal, Universidad de Alcalá de Henares, Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.
Begoña AguadoCentro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid, Madrid, Spain.
Santiago MorenoServicio de Enfermedades Infecciosas, Hospital Universitario Ramón y Cajal, Universidad de Alcalá de Henares, Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.
José AlcamiAIDS Immunopathology Unit, Instituto de Salud Carlos III, Centro Nacional de Microbiología, Madrid, Spain ppalcami@isciii.es mayteperez@isciii.es.
Mayte Pérez-OlmedaAIDS Immunopathology Unit, Instituto de Salud Carlos III, Centro Nacional de Microbiología, Madrid, Spain ppalcami@isciii.es mayteperez@isciii.es.
Centro de Biología Molecular Severo Ochoa · ESCentro Nacional de Microbiologia · ESHospital Universitario Ramón y Cajal · ESInstituto de Salud Carlos III · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we have characterized quasispecies dynamics and the evolution of viral tropism in naive HIV-1-infected patients treated with a short course of maraviroc monotherapy (ClinicalTrials.gov registration no. NCT01060618) independently of the tropism of the infecting virus. We randomly selected 20 patients infected with viruses displaying different basal tropisms-10 carrying R5 and 10 carrying dual/mixed X4 (DM/X4) viruses-at recruitment as determined by phenotypic assay (Trofile). Evolution of viral quasiespecies at the end of treatment was determined by ultradeep sequencing of the V3 region using a 454 Life Sciences Platform and geno2pheno (g2p) algorithm for viral tropism prediction. The false-positive rate (FPR) that defines the probability of classifying an R5 virus falsely as X4 was set at 10%. X4-specific HIV-1 viral load (VL) was calculated from sequences with an FPR of <3.75%. Virological response as defined as >1-log

Indexed as

AdultAnti-HIV AgentsCCR5 Receptor AntagonistsCyclohexanesFemaleHigh-Throughput Nucleotide SequencingHIV-1HIV InfectionsHumansMaleMaravirocMiddle AgedReceptors, CCR5Receptors, CXCR4TriazolesViral TropismAnti-HIV AgentsCCR5 Receptor AntagonistsCyclohexanesMaravirocReceptors, CCR5Receptors, CXCR4TriazolesCCR5CCR5 antagonistsCXCR4DM/X4 tropismHIV-1maravirocR5 tropismtropism

Identifiers

PMID29563289
PMCPMC5952159
OpenAlexW2790559265

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.