ArticleGenome research2018
Repeat associated mechanisms of genome evolution and function revealed by the
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Article in Genome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.
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76citing papers in PubMed, 1 pooled it
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76 citing papers in PubMed, 1 synthesis or guideline pooled it, 135 citations in OpenAlex.
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16 more citing papers are in PubMed but not listed here.
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Authors and funding
46 authors at 14 institutions in 5 countries.
David ThybertEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Maša RollerEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Fábio C P NavarroYale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA.
Ian FiddesDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Ian StreeterEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Christine FeigUniversity of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom.
David Martin-GalvezEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Mikhail KolmogorovDepartment of Computer Science and Engineering, University of California, San Diego, La Jolla, California 92092, USA.
Václav JanoušekDepartment of Zoology, Faculty of Science, Charles University in Prague, 128 44 Prague, Czech Republic.
Wasiu AkanniEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Bronwen AkenEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Sarah AldridgeUniversity of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom.
Varshith ChakrapaniEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
William ChowWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Laura ClarkeEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Carla CumminsEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Anthony DoranWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Matthew DunnWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Leo GoodstadtWellcome Trust Centre for Human Genetics, Oxford OX3 7BN, United Kingdom.
Kerstin HoweYale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA.
Matthew HowellEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Ambre-Aurore JosselinEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Robert C KarnDepartment of Medicine, College of Medicine, University of Arizona, Tuscon, Arizona 85724, USA.
Christina M LaukaitisDepartment of Medicine, College of Medicine, University of Arizona, Tuscon, Arizona 85724, USA.
Lilue JingtaoWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Fergal MartinEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Matthieu MuffatoEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Stefanie NachtweideInstitute of Mathematics and Computer Science, University of Greifswald, Greifswald 17487, Germany.
Michael A QuailWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Cristina SisuYale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA.
Mario StankeInstitute of Mathematics and Computer Science, University of Greifswald, Greifswald 17487, Germany.
Klara StefflovaUniversity of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom.
Cock Van OosterhoutSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom.
Frederic VeyrunesInstitut des Sciences de l'Evolution de Montpellier, Université Montpellier/CNRS, 34095 Montpellier, France.
Ben WardEarlham Institute, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Fengtang YangWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Golbahar YazdanifarDepartment of Medicine, College of Medicine, University of Arizona, Tuscon, Arizona 85724, USA.
Amonida ZadissaEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
David J AdamsWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Alvis BrazmaEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Mark GersteinYale University Medical School, Computational Biology and Bioinformatics Program, New Haven, Connecticut 06520, USA.
Benedict PatenDepartment of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.
Son PhamBioturing Inc, San Diego, California 92121, USA.
Thomas M KeaneEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
Duncan T OdomUniversity of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge CB2 0RE, United Kingdom.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
European Bioinformatics Institute · GBWellcome Sanger Institute · GBUniversity of Cambridge · GBYale University · USUniversity of Arizona · USUniversität Greifswald · DEUniversity of California, Santa Cruz · USBiopeptide (United States) · USCentre for Human Genetics · GBCentre National de la Recherche Scientifique · FRCharles University · CZNorwich Research Park · GBUniversity of California San Diego · USUniversity of East Anglia · GB
Funding
GENCODE Resource ProjectU41HG007234 · NHGRI · SANGER INSTITUTE · PI FLICEK, PAUL · 2013 to 2020
$20.3MTraining SubprojectU54HG007990 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, PATTERSON, DAVID · 2014 to 2018
$14.8MCancer Research UK 20412European Research Council 615584Medical Research Council MR/R017565/1NHGRI NIH HHS U41 HG007234NHGRI NIH HHS U54 HG007990Wellcome Trust 202878/Z/16/Z
Abstract
Understanding the mechanisms driving lineage-specific evolution in both primates and rodents has been hindered by the lack of sister clades with a similar phylogenetic structure having high-quality genome assemblies. Here, we have created chromosome-level assemblies of the
Indexed as
Evolution, MolecularPhylogenyAnimalsBinding SitesCCCTC-Binding FactorChromosomesGenomeKaryotypingLong Interspersed Nucleotide ElementsMiceMuridaeRetroelementsSpecies SpecificityCCCTC-Binding FactorCtcf protein, mouseRetroelements
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