Evidence map›Paper›PMID 29562282›Full record

ArticleGlycobiology2018

AANL (Agrocybe aegerita lectin 2) is a new facile tool to probe for O-GlcNAcylation.

Wei Liu, Guanghui Han, Yalin Yin, Shuai Jiang, Guojun Yu, Qing Yang, Wenhui Yu, Xiangdong Ye, Yanting Su, Yajun Yang and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Glycobiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Advances in chemical probing of proteinChemical Society reviews · 2021
    Review
  7. Article
  8. Role ofPhysiological reviews · 2021
    Review
  9. Mass Spectrometry for O-GlcNAcylation.Frontiers in chemistry · 2021
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Wei LiuHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Guanghui HanDepartment of Biological Chemistry, the Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Yalin YinHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Shuai JiangHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Guojun YuHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Qing YangHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Wenhui YuHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Xiangdong YeHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Yanting SuHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Yajun YangHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Gerald W HartDepartment of Biological Chemistry, the Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Hui SunHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University.
Wuhan University · CNJohns Hopkins Medicine · USJohns Hopkins University · US

Funding

Siglec Modulation of Inflammatory ResponsesP01HL107150 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LE, DZUNG T · 2011 to 2017
$18.0M
Shared Resource CoresP01HL107153 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI HART, GERALD WARREN · 2011 to 2017
$16.8M
Cytosolic O-Glycosylation and Insulin SignalingR01DK061671 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI HART, GERALD WARREN · 2002 to 2014
$4.0M
Nutrient Regulation of Cell Physiology by O-GlcNAcylationR01GM116891 · NIGMS · UNIVERSITY OF GEORGIA · PI HART, GERALD WARREN · 2016 to 2023
$2.4M
NHLBI NIH HHS P01 HL107150NHLBI NIH HHS P01 HL107153NIDDK NIH HHS R01 DK061671NIGMS NIH HHS R01 GM116891
6 · The paper itself

Abstract

O-linked N-acetylglucosamine (O-GlcNAcylation) is an important post-translational modification on serine or threonine of proteins, mainly observed in nucleus or cytoplasm. O-GlcNAcylation regulates many cell processes, including transcription, cell cycle, neural development and nascent polypeptide chains stabilization. However, the facile identification of O-GlcNAc is a major bottleneck in O-GlcNAcylation research. Herein, we report that a lectin, Agrocybe aegerita GlcNAc-specific lectin (AANL), also reported as AAL2, can be used as a powerful probe for O-GlcNAc identification. Glycan array analyses and surface plasmon resonance (SPR) assays show that AANL binds to GlcNAc with a dissociation constant (KD) of 94.6 μM, which is consistent with the result tested through isothiocyanate (ITC) assay reported before (Jiang S, Chen Y, Wang M, Yin Y, Pan Y, Gu B, Yu G, Li Y, Wong BH, Liang Y, et al. 2012. A novel lectin from Agrocybe aegerita shows high binding selectivity for terminal N-acetylglucosamine. Biochem J. 443:369-378.). Confocal imaging shows that AANL co-localizes extensively with NUP62, a heavily O-GlcNAcylated and abundant nuclear pore glycoprotein. Furthermore, O-GlcNAc-modified peptides could be effectively enriched in the late flow-through peak from simple samples by using affinity columns Sepharose 4B-AANL or POROS-AANL. Therefore, using AANL affinity column, we identified 28 high-confidence O-linked HexNAc-modified peptides mapped on 17 proteins involving diverse cellular progresses, including transcription, hydrolysis progress, urea cycle, alcohol metabolism and cell cycle. And most importantly, major proteins and sites were not annotated in the dbOGAP database. These results suggest that the AANL lectin is a new useful tool for enrichment and identification of O-GlcNAcylated proteins and peptides.

Indexed as

Protein Processing, Post-TranslationalAcetylglucosamineAgrocybeFungal ProteinsGlycomicsGlycosylationHeLa CellsHumansLectinsMembrane GlycoproteinsNuclear Pore Complex ProteinsProtein BindingAcetylglucosamineFungal ProteinsLectinsMembrane GlycoproteinsNuclear Pore Complex Proteinsnuclear pore protein p62

Identifiers

PMID29562282
PMCPMC6454498
OpenAlexW2804368631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.