Evidence map›Paper›PMID 29562179›Full record

ArticleCell reports2018

Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome.

Emily G Kaye, Matthew Booker, Jesse V Kurland, Alexander E Conicella, Nicolas L Fawzi, Martha L Bulyk, Michael Y Tolstorukov, Erica Larschan

Abstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Breaking anterior-posterior symmetry in the moth flybioRxiv : the preprint server for biology · 2025
    Article
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  5. Review
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  7. bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Emily G KayeDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912, USA.
Matthew BookerDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912, USA; Department of Molecular Biology, Massachusetts General Hospital, Cambridge, MA 02114, USA.
Jesse V KurlandDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA; Department of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Alexander E ConicellaDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912, USA.
Nicolas L FawziDepartment of Molecular Pharmacology, Physiology and Biotechnology, Brown University, Providence, RI 02912, USA.
Martha L BulykDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA; Department of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Michael Y TolstorukovDepartment of Molecular Biology, Massachusetts General Hospital, Cambridge, MA 02114, USA. Electronic address: tolstorukov@molbio.mgh.harvard.edu.
Erica LarschanDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912, USA. Electronic address: erica_larschan@brown.edu.

Funding

Predoctoral Training in the Molecular Biology of AgingT32AG041688 · NIA · BROWN UNIVERSITY · PI NICOLA NERETTI, John M Sedivy · 2012 to 2026
$3.5M
High-Throughput Identification of Tissue/Cell-Type-Specific Cis Regulatory ModuleR01HG005287 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI BULYK, MARTHA L · 2010 to 2016
$3.4M
Establishing coordinate gene regulation during Drosophila dosage compensationR01GM098461 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2011 to 2016
$2.1M
Establishment of Active Chromatin DomainsR35GM126994 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2018 to 2022
$2.0M
Turning off the molecular switch for pathological self-assembly of FUSR01GM118530 · NIGMS · BROWN UNIVERSITY · PI FAWZI, NICOLAS LUX · 2016 to 2020
$1.6M
NHGRI NIH HHS R01 HG005287NIA NIH HHS T32 AG041688NIGMS NIH HHS R01 GM098461NIGMS NIH HHS R01 GM118530NIGMS NIH HHS R35 GM126994
6 · The paper itself

Abstract

Little is known about how variation in sequence composition alters transcription factor occupancy to precisely recruit large transcription complexes. A key model for understanding how transcription complexes are targeted is the Drosophila dosage compensation system in which the male-specific lethal (MSL) transcription complex specifically identifies and regulates the male X chromosome. The chromatin-linked adaptor for MSL proteins (CLAMP) zinc-finger protein targets MSL to the X chromosome but also binds to GA-rich sequence elements throughout the genome. Furthermore, the GAGA-associated factor (GAF) transcription factor also recognizes GA-rich sequences but does not associate with the MSL complex. Here, we demonstrate that MSL complex recruitment sites are optimal CLAMP targets. Specificity for CLAMP binding versus GAF binding is driven by variability in sequence composition within similar GA-rich motifs. Therefore, variation within seemingly similar cis elements drives the context-specific targeting of a large transcription complex.

Indexed as

AnimalsDrosophilaFemaleGA-Binding Protein Transcription FactorMaleSex ChromosomesX ChromosomeGA-Binding Protein Transcription Factorchromatindosage compensationDrosophilatranscription factors

Identifiers

PMID29562179
PMCPMC6402580

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.