Evidence map›Paper›PMID 29562132›Full record

ArticleBiochemistry2018

Design of Bivalent Nucleic Acid Ligands for Recognition of RNA-Repeated Expansion Associated with Huntington's Disease.

Shivaji A Thadke, J Dinithi R Perera, V M Hridya, Kirti Bhatt, Ashif Y Shaikh, Wei-Che Hsieh, Mengshen Chen, Chakicherla Gayathri, Roberto R Gil, Gordon S Rule and 3 more

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. A pothole-filling strategy for selective targeting of rCUG-repeats associated with myotonic dystrophy type 1.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Targeting RNA structures with small molecules.Nature reviews. Drug discovery · 2022
    Review
  8. Review
  9. Review
  10. Fluorobenzene Nucleobase Analogues for Triplex-Forming Peptide Nucleic Acids.Chembiochem : a European journal of chemical biology · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Shivaji A Thadke
J Dinithi R Perera
V M HridyaDepartment of Chemistry , Indian Institute of Science Education and Research (IISER) , Pune , Maharashtra 411008 , India.
Kirti BhattDepartment of Neurology , Box 645, University of Rochester Medical Center , 601 Elmwood Avenue , Rochester , New York 14642 , United States.
Ashif Y Shaikh
Wei-Che Hsieh
Mengshen Chen
Chakicherla Gayathri
Roberto R Gil
Arnab MukherjeeDepartment of Chemistry , Indian Institute of Science Education and Research (IISER) , Pune , Maharashtra 411008 , India.ORCID 0000-0001-5691-6120
Charles A ThorntonDepartment of Neurology , Box 645, University of Rochester Medical Center , 601 Elmwood Avenue , Rochester , New York 14642 , United States.
Carnegie Mellon University · USIndian Institute of Science Education and Research Pune · INUniversity of Rochester Medical Center · US

Funding

Training and Educational CoreU54NS048843 · NINDS · UNIVERSITY OF ROCHESTER · PI THORNTON, CHARLES A · 2003 to 2017
$21.9M
Therapeutic Modulation of Myotonic Muscular DystrophyR37NS094393 · NINDS · UNIVERSITY OF ROCHESTER · PI THORNTON, CHARLES A · 2015 to 2021
$2.5M
A Rational Approach to Targeting Unstable RNA RepeatsR21NS098102 · NINDS · CARNEGIE-MELLON UNIVERSITY · PI LY, DANITH H · 2017 to 2018
$425k
NINDS NIH HHS R21 NS098102NINDS NIH HHS R37 NS094393NINDS NIH HHS U54 NS048843
6 · The paper itself

Abstract

We report the development of a new class of nucleic acid ligands that is comprised of Janus bases and the MPγPNA backbone and is capable of binding rCAG repeats in a sequence-specific and selective manner via, inference, bivalent H-bonding interactions. Individually, the interactions between ligands and RNA are weak and transient. However, upon the installation of a C-terminal thioester and an N-terminal cystine and the reduction of disulfide bond, they undergo template-directed native chemical ligation to form concatenated oligomeric products that bind tightly to the RNA template. In the absence of an RNA target, they self-deactivate by undergoing an intramolecular reaction to form cyclic products, rendering them inactive for further binding. The work has implications for the design of ultrashort nucleic acid ligands for targeting rCAG-repeat expansion associated with Huntington's disease and a number of other related neuromuscular and neurodegenerative disorders.

Indexed as

Huntington DiseaseTrinucleotide Repeat ExpansionHumansLigandsRNALigandsRNA

Identifiers

PMID29562132
PMCPMC6091552
OpenAlexW2790114481

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.