Evidence map›Paper›PMID 29561598›Full record

ArticleBiochemistry2018

Development of a Rubredoxin-Type Center Embedded in a de Dovo-Designed Three-Helix Bundle.

Alison G Tebo, Tyler B J Pinter, Ricardo García-Serres, Amy L Speelman, Cédric Tard, Olivier Sénéque, Geneviève Blondin, Jean-Marc Latour, James Penner-Hahn, Nicolai Lehnert and 1 more

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Catalysis and Electron Transfer inChemical reviews · 2022
    Review
  6. De novo metalloprotein design.Nature reviews. Chemistry · 2022
    Article
  7. Nitrite reductase activity within an antiparallel de novo scaffold.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Article
  8. Article
  9. Article
  10. Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.Angewandte Chemie (International ed. in English) · 2020
    Review
  11. Rational De Novo Design of a Cu Metalloenzyme for Superoxide Dismutation.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alison G TeboProgram in Chemical Biology , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0003-0788-5617
Tyler B J PinterDepartment of Chemistry and Biophysics , University of Michigan , Ann Arbor , Michigan 48109 , United States.
Ricardo García-SerresUniversité Grenoble Alpes, CNRS, CEA, BIG, LCBM (UMR 5249), F-38054 Grenoble , France.ORCID 0000-0001-5203-0568
Amy L SpeelmanDepartment of Chemistry and Biophysics , University of Michigan , Ann Arbor , Michigan 48109 , United States.
Cédric TardLCM, CNRS, École Polytechnique, Université Paris-Saclay, 91128 Palaiseau Cedex, France.ORCID 0000-0002-1515-1915
Olivier SénéqueUniversité Grenoble Alpes, CNRS, CEA, BIG, LCBM (UMR 5249), F-38054 Grenoble , France.
Geneviève BlondinUniversité Grenoble Alpes, CNRS, CEA, BIG, LCBM (UMR 5249), F-38054 Grenoble , France.
Jean-Marc LatourUniversité Grenoble Alpes, CNRS, CEA, BIG, LCBM (UMR 5249), F-38054 Grenoble , France.
James Penner-HahnDepartment of Chemistry and Biophysics , University of Michigan , Ann Arbor , Michigan 48109 , United States.
Nicolai LehnertDepartment of Chemistry and Biophysics , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-5221-5498
Vincent L PecoraroProgram in Chemical Biology , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-1540-5735

Funding

MICHIGAN CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008597 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN · 1996 to 2018
$5.0M
Toxic Metal Complexation By de Novo Designed PeptidesR01ES012236 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PECORARO, VINCENT L · 2003 to 2018
$4.4M
NIEHS NIH HHS R01 ES012236NIGMS NIH HHS T32 GM008597
6 · The paper itself

Abstract

Protein design is a powerful tool for interrogating the basic requirements for the function of a metal site in a way that allows for the selective incorporation of elements that are important for function. Rubredoxins are small electron transfer proteins with a reduction potential centered near 0 mV (vs normal hydrogen electrode). All previous attempts to design a rubredoxin site have focused on incorporating the canonical CXXC motifs in addition to reproducing the peptide fold or using flexible loop regions to define the morphology of the site. We have produced a rubredoxin site in an utterly different fold, a three-helix bundle. The spectra of this construct mimic the ultraviolet-visible, Mössbauer, electron paramagnetic resonance, and magnetic circular dichroism spectra of native rubredoxin. Furthermore, the measured reduction potential suggests that this rubredoxin analogue could function similarly. Thus, we have shown that an α-helical scaffold sustains a rubredoxin site that can cycle with the desired potential between the Fe(II) and Fe(III) states and reproduces the spectroscopic characteristics of this electron transport protein without requiring the classic rubredoxin protein fold.

Indexed as

Protein Conformation, alpha-HelicalCircular DichroismElectron Spin Resonance SpectroscopyElectron TransportFerric CompoundsIronModels, MolecularOxidation-ReductionRubredoxinsFerric CompoundsIronRubredoxins

Identifiers

PMID29561598
PMCPMC5982097

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.