Evidence map›Paper›PMID 29561359›Full record

ArticlePain2018

Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research.

Pradipta Ray, Andrew Torck, Lilyana Quigley, Andi Wangzhou, Matthew Neiman, Chandranshu Rao, Tiffany Lam, Ji-Young Kim, Tae Hoon Kim, Michael Q Zhang and 2 more

Abstract readComparative Study
In one paragraph

Article in Pain, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 222 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
222citing papers in PubMed, 2 pooled it
25.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

222 citing papers in PubMed, 2 syntheses or guidelines pooled it, 352 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
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    Review
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  20. Glucagon-Like Peptide-1 Targets in the Human Nodose Ganglion.The Journal of comparative neurology · 2026
    Article

162 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Pradipta RaySchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Andrew TorckSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Lilyana QuigleySchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Andi WangzhouSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Matthew NeimanSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Chandranshu RaoSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Tiffany LamSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Ji-Young KimSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Tae Hoon KimDepartment of Biological Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Michael Q ZhangDepartment of Biological Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Gregory DussorSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
Theodore J PriceSchool of Behavioral and Brain Sciences, The University of Texas at Dallas, Richardson, TX, USA.
The University of Texas at Dallas · US

Funding

Translation Control of Pain PlasticityR01NS065926 · NINDS · UNIVERSITY OF TEXAS DALLAS · PI PRICE, THEODORE J. · 2010 to 2023
$5.7M
Transcriptome-based systematic discovery of GABAergic neurons in the neocortexR01MH109665 · NIMH · DUKE UNIVERSITY · PI HUANG, Z JOSH · 2016 to 2020
$4.0M
Cell-based genomic analysis of molecular pathology in Mouse Models of Rett SyndromeR01MH102616 · NIMH · COLD SPRING HARBOR LABORATORY · PI HUANG, Z JOSH · 2014 to 2018
$3.8M
Protease Activated Receptor Type 2 Targeting for Migraine PainR01NS098826 · NINDS · UNIVERSITY OF TEXAS DALLAS · PI GREGORY O DUSSOR, Theodore J Price · 2017 to 2026
$3.4M
AMPK ACTIVATORS FOR THE TREATMENT OF POST-SURGICAL PAINR01GM102575 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI DUSSOR, GREGORY O, PRICE, THEODORE J. · 2013 to 2016
$1.1M
NIGMS NIH HHS R01 GM102575NIMH NIH HHS R01 MH102616NIMH NIH HHS R01 MH109665NINDS NIH HHS R01 NS065926NINDS NIH HHS R01 NS098826
6 · The paper itself

Abstract

Molecular neurobiological insight into human nervous tissues is needed to generate next-generation therapeutics for neurological disorders such as chronic pain. We obtained human dorsal root ganglia (hDRG) samples from organ donors and performed RNA-sequencing (RNA-seq) to study the hDRG transcriptional landscape, systematically comparing it with publicly available data from a variety of human and orthologous mouse tissues, including mouse DRG (mDRG). We characterized the hDRG transcriptional profile in terms of tissue-restricted gene coexpression patterns and putative transcriptional regulators, and formulated an information-theoretic framework to quantify DRG enrichment. Relevant gene families and pathways were also analyzed, including transcription factors, G-protein-coupled receptors, and ion channels. Our analyses reveal an hDRG-enriched protein-coding gene set (∼140), some of which have not been described in the context of DRG or pain signaling. Most of these show conserved enrichment in mDRG and were mined for known drug-gene product interactions. Conserved enrichment of the vast majority of transcription factors suggests that the mDRG is a faithful model system for studying hDRG, because of evolutionarily conserved regulatory programs. Comparison of hDRG and tibial nerve transcriptomes suggests trafficking of neuronal mRNA to axons in adult hDRG, and are consistent with studies of axonal transport in rodent sensory neurons. We present our work as an online, searchable repository (https://www.utdallas.edu/bbs/painneurosciencelab/sensoryomics/drgtxome), creating a valuable resource for the community. Our analyses provide insight into DRG biology for guiding development of novel therapeutics and a blueprint for cross-species transcriptomic analyses.

Indexed as

TranscriptomeAnimalsBase SequenceGanglia, SpinalGene Expression ProfilingHumansMiceNeurosciencesPain

Identifiers

PMID29561359
PMCPMC6008200
OpenAlexW2762851710

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.