Evidence map›Paper›PMID 29560110›Full record

ArticleOncotarget2018

Evaluation of three polygenic risk score models for the prediction of breast cancer risk in Singapore Chinese.

Claire Hian Tzer Chan, Prabhakaran Munusamy, Sau Yeen Loke, Geok Ling Koh, Audrey Zhi Yi Yang, Hai Yang Law, Chui Sheun Yoon, Chow Yin Wong, Wei Sean Yong, Nan Soon Wong and 10 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Evaluation of Multiple Breast Cancer Polygenic Risk Score Panels in Women of Latin American Heritage.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Article
  4. Article
  5. Article
  6. Development of a Breast Cancer Risk Prediction Model Incorporating Polygenic Risk Scores and Nongenetic Risk Factors for Korean Women.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  7. Article
  8. Article
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  11. Review
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  14. Polygenic Determinants for Subsequent Breast Cancer Risk in Survivors of Childhood Cancer: The St Jude Lifetime Cohort Study (SJLIFE).Clinical cancer research : an official journal of the American Association for Cancer Research · 2018
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 1 country.

Claire Hian Tzer Chan *Division of Medical Sciences, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore.
Prabhakaran Munusamy *Division of Medical Sciences, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore.
Sau Yeen LokeDivision of Medical Sciences, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore.
Geok Ling KohDivision of Medical Sciences, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore.
Audrey Zhi Yi YangDivision of Medical Sciences, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore.
Hai Yang LawDNA Diagnostic and Research Laboratory, KK Women's and Children's Hospital, Singapore.
Chui Sheun YoonDNA Diagnostic and Research Laboratory, KK Women's and Children's Hospital, Singapore.
Chow Yin WongDepartment of General Surgery, Singapore General Hospital, Singapore.
Wei Sean YongDepartment of Surgical Oncology, National Cancer Centre, Singapore.
Nan Soon WongDepartment of Medical Oncology, National Cancer Centre, Singapore.
Raymond Chee Hui NgDepartment of Medical Oncology, National Cancer Centre, Singapore.
Kong Wee OngDepartment of Surgical Oncology, National Cancer Centre, Singapore.
Preetha MadhukumarDepartment of Surgical Oncology, National Cancer Centre, Singapore.
Chung Lie OeyDepartment of Surgical Oncology, National Cancer Centre, Singapore.
Gay Hui HoDepartment of Surgical Oncology, National Cancer Centre, Singapore.
Puay Hoon TanDepartment of Pathology, Singapore General Hospital, Singapore.
Min Han TanDepartment of Medical Oncology, National Cancer Centre, Singapore.
Peter AngDepartment of Medical Oncology, National Cancer Centre, Singapore.
Yoon Sim YapDepartment of Medical Oncology, National Cancer Centre, Singapore.
Ann Siew Gek LeeDivision of Medical Sciences, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore.
National Cancer Centre Singapore · SGKK Women's and Children's Hospital · SGSingapore General Hospital · SGGleneagles Hospital · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have proven highly successful in identifying single nucleotide polymorphisms (SNPs) associated with breast cancer (BC) risk. The majority of these studies are on European populations, with limited SNP association data in other populations. We genotyped 51 GWAS-identified SNPs in two independent cohorts of Singaporean Chinese. Cohort 1 comprised 1294 BC cases and 885 controls and was used to determine odds ratios (ORs); Cohort 2 had 301 BC cases and 243 controls for deriving polygenic risk scores (PRS). After age-adjustment, 11 SNPs were found to be significantly associated with BC risk. Five SNPs were present in <1% of Cohort 1 and were excluded from further PRS analysis. To assess the cumulative effect of the remaining 46 SNPs on BC risk, we generated three PRS models: Model-1 included 46 SNPs; Model-2 included 11 statistically significant SNPs; and Model-3 included the SNPs in Model-2 but excluded SNPs that were in strong linkage disequilibrium with the others. Across Models-1, -2 and -3, women in the highest PRS quartile had the greatest ORs of 1.894 (95% CI = 1.157-3.100), 2.013 (95% CI = 1.227-3.302) and 1.751 (95% CI = 1.073-2.856) respectively, suggesting a direct correlation between PRS and BC risk. Given the potential of PRS in BC risk stratification, our findings suggest the need to tailor the selection of SNPs to be included in an ethnic-specific PRS model.

Indexed as

breast cancergenotypingpolygenic risk scorerisk locisingle-nucleotide polymorphism

Identifiers

PMID29560110
PMCPMC5849174
OpenAlexW2794127671

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.