Evidence map›Paper›PMID 29559695›Full record

ArticleScientific reports2018

Human cytochrome P450 2B6 genetic variability in Botswana: a case of haplotype diversity and convergent phenotypes.

Leabaneng Tawe, Thato Motshoge, Pleasure Ramatlho, Naledi Mutukwa, Charles Waithaka Muthoga, Ghyslaine Bruna Djeunang Dongho, Axel Martinelli, Elias Peloewetse, Gianluca Russo, Isaac Kweku Quaye and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Association ofPharmacogenomics and personalized medicine · 2021
    Article
  5. Article
  6. Past and current biological factors affecting malaria in the low transmission setting of Botswana: A review.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 6 countries.

Leabaneng TaweUniversity of Botswana, Department of Medical Laboratory Sciences, Gaborone, Botswana.
Thato MotshogeUniversity of Botswana, Department of Biological Sciences, Gaborone, Botswana.
Pleasure RamatlhoUniversity of Botswana, Department of Biological Sciences, Gaborone, Botswana.
Naledi MutukwaUniversity of Botswana, Department of Pathology, Gaborone, Botswana.
Charles Waithaka MuthogaBotswana-University of Pennsylvania Partnership, Gaborone, Botswana.
Ghyslaine Bruna Djeunang DonghoSapienza University of Rome, Department of Infectious Diseases and Public Health, Rome, Italy.
Axel MartinelliGlobal Institution for Collaborative Research and Education, Hokkaido University, Sapporo, Japan.
Elias PeloewetseUniversity of Botswana, Department of Biological Sciences, Gaborone, Botswana.
Gianluca RussoSapienza University of Rome, Department of Infectious Diseases and Public Health, Rome, Italy.ORCID 0000-0002-8764-7389
Isaac Kweku QuayeUniversity of Namibia, Department of Biochemistry, Windhoek, Namibia.
Giacomo Maria PaganottiBotswana-University of Pennsylvania Partnership, Gaborone, Botswana. paganottig@bup.org.bw.
University of Botswana · BWSapienza University of Rome · ITHokkaido University · JPUniversity of Namibia · NA

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID S METZGER · 1999 to 2026
$78.6M
NIAID NIH HHS P30 AI045008Wellcome TrustWellcome Trust 107752/Z/15/Z
6 · The paper itself

Abstract

Identification of inter-individual variability for drug metabolism through cytochrome P450 2B6 (CYP2B6) enzyme is important for understanding the differences in clinical responses to malaria and HIV. This study evaluates the distribution of CYP2B6 alleles, haplotypes and inferred metabolic phenotypes among subjects with different ethnicity in Botswana. A total of 570 subjects were analyzed for CYP2B6 polymorphisms at position 516 G > T (rs3745274), 785 A > G (rs2279343) and 983 T > C (rs28399499). Samples were collected in three districts of Botswana where the population belongs to Bantu (Serowe/Palapye and Chobe) and San-related (Ghanzi) ethnicity. The three districts showed different haplotype composition according to the ethnic background but similar metabolic inferred phenotypes, with 59.12%, 34.56%, 2.10% and 4.21% of the subjects having, respectively, an extensive, intermediate, slow and rapid metabolic profile. The results hint at the possibility of a convergent adaptation of detoxifying metabolic phenotypes despite a different haplotype structure due to the different genetic background. The main implication is that, while there is substantial homogeneity of metabolic inferred phenotypes among the country, the response to drugs metabolized via CYP2B6 could be individually associated to an increased risk of treatment failure and toxicity. These are important facts since Botswana is facing malaria elimination and a very high HIV prevalence.

Indexed as

EthnicityGenotypeAnti-HIV AgentsAntimalarialsBotswanaChildChild, PreschoolCytochrome P-450 CYP2B6Gene FrequencyHIV InfectionsHumansInactivation, MetabolicLinkage DisequilibriumMalariaPhenotypePolymorphism, Single NucleotideAnti-HIV AgentsAntimalarialsCytochrome P-450 CYP2B6

Identifiers

PMID29559695
PMCPMC5861095
OpenAlexW2791872080

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.